Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a17
         (236 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   8.3  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   8.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   8.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   8.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 178 LCPYFHVKAMFLRK 219
           +CPYF   +  L+K
Sbjct: 165 MCPYFFFNSEVLQK 178


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 178 LCPYFHVKAMFLRK 219
           +CPYF   +  L+K
Sbjct: 165 MCPYFFFNSEVLQK 178


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 110 IHAHFRNLFK 81
           +H H +N+FK
Sbjct: 55  VHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 110 IHAHFRNLFK 81
           +H H +N+FK
Sbjct: 38  VHNHIQNIFK 47


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 2   NICLR*NVXKTRKKN 46
           N+CL+    K RKK+
Sbjct: 115 NVCLKFEEQKRRKKS 129


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 116 YLIHAHFRNLFK 81
           Y+ HA+ RN++K
Sbjct: 666 YVSHANQRNMYK 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,974
Number of Sequences: 438
Number of extensions: 567
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)