Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a16
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    34   0.013
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.16 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   0.66 
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    29   0.66 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   0.87 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    28   1.2  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    27   1.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   1.5  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   2.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   3.5  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   3.5  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.7  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   6.2  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.2  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    25   8.1  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   8.1  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   8.1  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
 Frame = +3

Query: 243 RGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKR 422
           RG  S+P  R  S+P+ +     P P + P   ++         + +      +T QS  
Sbjct: 117 RGTPSLP-SRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP----SYSSSGSYSQTYQSNA 171

Query: 423 KRFFRRPVPNARLYRPGP-PPPKLISKQARVTWTAVSAGRALDTAS 557
                 P+P A    P P PPP+ +S+ +     +V A  A  TAS
Sbjct: 172 NYTASSPLPTASANAPLPVPPPRRVSQNSSYASGSVPAATAASTAS 217


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = +3

Query: 84  SAKNQSNLRESAKASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVDIIDL 233
           S++++S+  ES+ + S++EVIV   EK E S+  ++     EEE  ++ +
Sbjct: 107 SSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKI 156


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 240 PRGIRSVPPERVSSKPARVASTYT--PNPRLYPGPQAKFKKVKR 365
           PR +  VP  +  S+ + V S+    P P  YPGP    K V+R
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKNVER 144


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = +3

Query: 9   LEINEWKGFFQSSKFSVIN*EKMVLSAKNQSNLRESAKASSKKEVIVVHSEKIEYSNGLN 188
           L++ E K   ++ + S I  E  +   K +  + E   A  + E    +SEK EY   ++
Sbjct: 325 LDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYESEKSYSEK-EYEEKIS 383

Query: 189 TLKAELEEEVDIIDL 233
           +L+ ELE+++  ID+
Sbjct: 384 SLRIELEDKLAEIDM 398


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
 Frame = +3

Query: 213 EVDIIDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKF-------------K 353
           ++  ID  +P  I S  P   S+     +S+ T +P   P P AK              K
Sbjct: 541 KITTIDGESPSSISSRLPS--SNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEK 598

Query: 354 KVKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPP 482
               + AT     +PK+T+ SK    F  P P A L  P  PP
Sbjct: 599 SAVNNYATPLSKPQPKDTKGSKLGNTFVAPSPAASL--PASPP 639


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 201 ELEEEVDIIDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGP 338
           +L   V ++    PR IR     + +S P +  S   PN   Y GP
Sbjct: 260 KLTRSVSLLQHKTPRRIRPKSLSKSNSTPLKHLSAQKPNSNYYTGP 305


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 384 KPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPKLISKQARVTWTAVSAGRAL 545
           +  E   +  SK+ R  R+P P +   +  P P + I K+ R      S G+++
Sbjct: 503 RSVEANSSNSSKKTRKRRKPTPKSFNPKATPDPQRWIPKRDRTNVKIKSKGKSM 556


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 126 SSKKEVIVVHSEKIEYSNGLNTLKAELEEE 215
           SSK+  IV    +IE+ N L  L+ +LE E
Sbjct: 340 SSKEAEIVFRKSRIEFMNKLKALQQKLENE 369


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
 Frame = +3

Query: 90  KNQSNLRESAK--ASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVD--IIDLGAPRGIRS 257
           +N+ N   +A+  ++SK ++ ++ + ++E  N       E+EE+VD   +DL  P+G + 
Sbjct: 225 QNERNRERNAQRVSASKLDLAILEAAEVEEINSTT----EIEEKVDEASLDLYTPKGHKI 280

Query: 258 V-PPERVSSKPAR---------VASTYTPNPRLYPGPQAKFKKVKRD 368
           V P   +  K  R              T +P L P  + K  + KRD
Sbjct: 281 VFPNNEIPKKRTRSFRKGDFKVSVLKETNDPLLAPNYEKKLSQRKRD 327


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 240 PRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEP-KETQQS 416
           P G  S+P    +++ A    +      L+ G   K + + +  A+   P+ P   T QS
Sbjct: 76  PTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSAPAPPTPQS 135

Query: 417 KRKRFFRRPVPNARLYRPGPPPP 485
           +      RP P +   RP  PPP
Sbjct: 136 E-----LRP-PTSAPPRPSIPPP 152


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 225 IDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATE----TKPA 392
           I L  P G     PE  S++  R       +PR +P  + K ++  +D   +    TKP+
Sbjct: 767 IVLSLPHGYDGQGPEHSSARMERYLQLCNEDPREFPS-EEKLQRQHQDCNIQAIYVTKPS 825

Query: 393 EPKETQQSKRKRFFRRPV 446
           +     +    R FR+P+
Sbjct: 826 QYFHALRRNIHRQFRKPL 843


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/100 (20%), Positives = 36/100 (36%)
 Frame = +3

Query: 270 RVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKRKRFFRRPVP 449
           R++  P     +    P  Y        +V   +  E  P   + T  ++RK     P+P
Sbjct: 524 RIAKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRK-----PLP 578

Query: 450 NARLYRPGPPPPKLISKQARVTWTAVSAGRALDTASRAAL 569
           +   + P P     I K     +   S+ R  + +S + L
Sbjct: 579 DTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTL 618


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 18/81 (22%), Positives = 31/81 (38%)
 Frame = +3

Query: 309 TPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPK 488
           +P+P+ Y GP         D +  + P+       S    F   P PN  +Y P    P 
Sbjct: 271 SPSPQPYSGPILASTAPTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPT 330

Query: 489 LISKQARVTWTAVSAGRALDT 551
           +  + + V  +  S   ++ T
Sbjct: 331 VNDRVSNVLPSITSFDSSVTT 351


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 280 ANPRGSLQPTLLIRDCILGPRRSLKK*RETAQRRPSQLNPRKPNNQSASGSSAGPCP 450
           ++P+   Q    +R   + P  S+      +   PS  N   P   +AS SSA P P
Sbjct: 30  SDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAP 86


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +3

Query: 264 PERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKE 404
           P+     P +  +T      L P P+ K    K+    E  P EP E
Sbjct: 147 PDSQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 303 TYTPNPRLYPGPQAKFKKVKRDRATETKPAEPKETQQSKRKR 428
           T  P+ +     QA  +K K  RATE    E K+  +  RKR
Sbjct: 55  TAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKR 96


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 300 KRPARVCCSRVLEAHFGCPSVLRGL*YRLPLPIQLSM 190
           K+P   C   VL A+  CP++LR    RL +P+  S+
Sbjct: 296 KKPVIFCGHGVL-ANPECPTLLRKFSERLQIPVTTSL 331


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +3

Query: 201 ELEEEVDIIDLGAPRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDR 371
           E+E++   I       +  +PP    +K  ++ S Y    R+Y  P++  K+ +R R
Sbjct: 110 EVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQRLR 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,118
Number of Sequences: 5004
Number of extensions: 44981
Number of successful extensions: 181
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)