Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a16
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.10 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   3.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   3.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.9  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 111 ESAKASSKKEVIVVHSEKIEYSNGLNTLKAELEEEVDIIDLGAPRGIRSVP 263
           E  K ++ ++ ++  + K++     + +K  + EEVD +  G    I SVP
Sbjct: 7   EKCKITANRQQVMRQNMKLKRHLAQDKVKVRVAEEVDPLPFGVENTISSVP 57


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 240 PRGIRSVPPERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 401
           PR  R    E  +++P  +     P+PRL   P+A+    +     + +P  P+
Sbjct: 114 PRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPR 167


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 267 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 401
           +R S    R   +Y  N R Y   + + K+  RDR    +  EPK
Sbjct: 37  KRYSRSREREQKSYK-NERKYRKYRERSKERSRDRTERERSREPK 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 267 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 401
           +R S    R   +Y  N R Y   + + K+  RDR    +  EPK
Sbjct: 37  KRYSRSREREQKSYK-NERKYRKYRERSKERSRDRTERERSREPK 80


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 267 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 401
           +R S    R  ++Y  N R Y   + + K+  RDR    +  EPK
Sbjct: 270 KRYSRSREREQNSYK-NEREYRKYRERSKERSRDRTERERSREPK 313


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 372 ATETKPAEPKETQQSKRKRFFRRPVPNARLY 464
           +TET P+  +       +RFF+   P A +Y
Sbjct: 535 STETPPSYNQLNYNENIERFFKSKPPVATMY 565


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 357 VKRDRATETKPAEPKETQQSKRKRFFRRPVPNARLYRPGPPPPK 488
           + RD ++     +P  T +S+ +RFF        +Y P    P+
Sbjct: 482 ITRDISSLVVQEQPTPTTESEERRFFSFHQWGILVYEPSACRPR 525


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 267 ERVSSKPARVASTYTPNPRLYPGPQAKFKKVKRDRATETKPAEPK 401
           +R S    R  ++Y  N R Y   +   K+  RDRA   +  EPK
Sbjct: 36  KRNSRSREREQNSYK-NEREYRKYRETSKERSRDRAERERSREPK 79


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 582 LQPDLEPHEMLCPVLVQRSRQSRSHELAWRS 490
           ++PD E  +   P+L  R R+     L+W+S
Sbjct: 41  IEPDTELMDSNEPLLPLRHRRVTCDVLSWQS 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,301
Number of Sequences: 438
Number of extensions: 3277
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)