Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a15
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381...    69   3e-12
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    58   5e-09
09_01_0134 - 2008793-2009315,2009361-2009423,2009804-2010012,201...    28   5.7  

>03_05_0901 +
           28635672-28636094,28637623-28637802,28637903-28638172,
           28638506-28638757,28639205-28639453,28639533-28639606,
           28639798-28639915,28640421-28640555,28640813-28640965
          Length = 617

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 37/120 (30%), Positives = 63/120 (52%)
 Frame = +3

Query: 240 MKLYYKIESMQITGSFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGXXX 419
           + L+ K E +Q   SFK RG+ N++  L  ++ + GV+ +S GN A G+     +LG   
Sbjct: 130 VNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERGVICSSAGNHAQGVALSAQRLGCDA 189

Query: 420 XXXXXXXXXXCKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTYINARDHPHILMG 599
                      K ++   LGA V+L+G +  E+Q +A+   + +G T+I   DHP ++ G
Sbjct: 190 VIVMPVTTPEIKWRSVERLGATVVLKGDSYDEAQSYAKQRCEQEGRTFIPPFDHPDVISG 249


>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
 Frame = +3

Query: 159 VKDALERLSPFITKTPCMPSHHQREFTMK-LYYKIESMQITGSFKERGSLNVLQLLPLDK 335
           +++A  R++P++ KTP + S        K L++K E  Q  G+FK RG+ N +  L  D+
Sbjct: 24  IREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSIFALDDDE 83

Query: 336 KKIGVVIASIGNDAIGICHYGAKLGXXXXXXXXXXXXXCKLQNCYSLGAKVILEGSNLTE 515
              GVV  S GN A  +       G             CK+ N    G  +I    ++  
Sbjct: 84  ASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYGGHIIWSDVSIES 143

Query: 516 SQRFARSLAKDKGLTYINARDHPHILMGLRYIS 614
            +  A+ + ++ G   ++  ++ + + G   +S
Sbjct: 144 RESVAKRVQEETGAILVHPFNNKNTISGQGTVS 176


>09_01_0134 -
           2008793-2009315,2009361-2009423,2009804-2010012,
           2010313-2010342,2010430-2010491,2010588-2010771
          Length = 356

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 381 QWRHCLLKLSRRRSSFYLMVTVAKRLVNPSL*NFP 277
           +++HC   +SR+    Y++V + + +V P+  NFP
Sbjct: 274 RFKHCGETISRKFEILYVVVDLGRDIVRPNNPNFP 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,707
Number of Sequences: 37544
Number of extensions: 332082
Number of successful extensions: 799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)