Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a11
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    29   0.43 
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   9.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.3  

>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 414 GFHQPDTSSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINN 590
           GF+ P    +V +A    +S++  KH    E+ L  + S +KV Q+ KP    ND  N+
Sbjct: 205 GFNAPSPDDIVLMAQ--SKSKSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNND 261


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 519 VGDILPC*YYALKEFLIALLVWLN*PSMKYLVGGNH 412
           +GD +   +Y+++ FL+ L +    P    L+ GNH
Sbjct: 79  LGDFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNH 114


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 435 SSMVNLATLIKQSRTPSKHSINMEEYLLPLTSWEKVDQENKPCDLENDKINNPFNP 602
           +S  N+     + R  ++H++N+    L  T+   + ++    D+EN   N PF+P
Sbjct: 632 ASSKNVPLSPPKQRVVNEHALNIMSEKLQRTN---LKEQTPEMDIENSSQNLPFSP 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,483
Number of Sequences: 5004
Number of extensions: 52719
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)