Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a10
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   2.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.2  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    26   3.9  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   3.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    25   9.0  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.0  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 370 VILLTLVFVMLWVWFGKTIVIPFFVTFWEVLTDTEPQE 483
           +ILL  + +++++WFG  + + + V   E  TD+   +
Sbjct: 339 IILLFTLQLLIYIWFGMIVKVAYRVFSGEEATDSRSDD 376


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 239 TQHSQNRAHNIYGKQNTSHQLYRKTSSACV 150
           +Q S  R+++++ KQNT H     +SS+ V
Sbjct: 168 SQQSNTRSNSVHEKQNTDHASNASSSSSVV 197


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 252 WNKPVPRVLDDDTMAR-L*NH--EDHHTESDHISLLFLPILSSYIADA 386
           WN+P+ +    D   R   +H  E H+T  DH++L+   +L+SY   A
Sbjct: 229 WNEPLLKSAGFDQAERSALSHLLEAHNTILDHVALVSPKVLNSYTNSA 276


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 494 TLQGCLSEGIVLEKVKYS 547
           TLQGCL   +  EKV+YS
Sbjct: 299 TLQGCLERFVSKEKVQYS 316


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 436  FFVTFWEVLTDTEPQETRKNITR-LSFRRYC 525
            FF TF+ +L  T+      NIT  LSF+  C
Sbjct: 2381 FFTTFYSLLDQTKLFTRSSNITESLSFKELC 2411


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 278 QYTRHWFVPAQSDTQHSQNRAHNIYGKQNTSHQLYRKTS 162
           Q+TR   +P+Q  T+    R  +I  KQ T  Q  R+ S
Sbjct: 721 QHTRQESLPSQQTTETKHLRKESIPSKQPTEGQHARQES 759


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 276 IHEALVCSSTERYTAFPKPCTQYIWEAKHFPPVISEDIIGLRVK 145
           +HE   CSSTE+       C  Y  E K  P V+  D   L +K
Sbjct: 147 VHEH--CSSTEKGDDAILDCCIYYQEEKLIPAVLLSDDKNLSIK 188


>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 231 FPKPCTQYIWEAKHFPPVISEDIIGLRVKTLYFNFVTSYP 112
           FP+  +  I E  H  P  +  ++ L V T Y  F+  YP
Sbjct: 41  FPETLSPEILEKMHAAPKPNYPVVTLDVLTQYDAFLFGYP 80


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 327 RCGDLRDF-TNEPLYHHPIHEALVCSST 247
           +CG L++  TN P Y+   HE+ +CS++
Sbjct: 78  KCGILQEVGTNSPSYYLFGHESNICSAS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,024
Number of Sequences: 5004
Number of extensions: 57468
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)