Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a10
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    29   3.6  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 180 LVGSVLLPIYIVCTVLGMLCIALCWNKPVPRVLDDDT 290
           LV   +L IY +C  +GM  IAL + K V R L D T
Sbjct: 108 LVIRFILIIYFLCGFMGMTRIALTYGKDVLRGLPDGT 144


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 543 YFTFSKTIPSERQPCNVFTSLLRFSVGKNFPKSHKKWYNYSFT-EPN 406
           +FT S+TI       ++  S++   + +N PK H+ W N + T  PN
Sbjct: 181 HFTISRTIVGFFTGGSI--SIINVFIMENIPKKHRMWINMAITWSPN 225


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 403 WVWFGKTIVIPFFVTFWEVLTDT 471
           WV  G   ++PFFVT+   L DT
Sbjct: 130 WVVMGVIFIVPFFVTYHIFLYDT 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,803
Number of Sequences: 27780
Number of extensions: 322156
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)