Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a07
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.1  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   5.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.8  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   6.8  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   9.0  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 139  ILLRDRTYYLHSIYFLRFSPDV 74
            +L  +R Y  H +Y L  SPDV
Sbjct: 1393 LLQENRVYAAHLVYILSLSPDV 1414


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 263 SSKKLSKFAYKENPTKKLKINGSIVSIFYNI 355
           S KK ++   KENP +KLK   S  S FY++
Sbjct: 80  SEKKETEETPKENPLEKLKQKASTAS-FYDV 109


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 154 LEEIGILLRDRTYYLHSIYFLRFSP 80
           LE +G   R+  +Y H  Y  +FSP
Sbjct: 292 LEHVGFYYREGKFYCHLDYHEQFSP 316


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 405 HAFFYNKIIFSYTIFNSKLLKF 470
           HAF +NK  F ++ ++  L KF
Sbjct: 279 HAFLFNKPFFDFSFYSPCLTKF 300


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 353 YYKILILCSHLFSIF*LDFL-YKRILIVFLNYYFICT 246
           +YK  I C+ +F  F +D L Y  +  + LN+YF CT
Sbjct: 147 FYKHRIPCTLVFQDFNVDVLRYVTLPNLLLNWYF-CT 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,797
Number of Sequences: 5004
Number of extensions: 40976
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)