Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a07
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0077 + 9657875-9658017,9658702-9658819,9659824-9659914,966...    29   3.0  
08_01_0857 + 8411305-8411349,8412919-8413009,8413196-8413285,841...    29   3.0  
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605     29   4.0  
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505...    28   7.0  
02_05_0785 - 31730300-31730701,31730785-31730856,31730940-317328...    27   9.2  

>11_03_0077 +
           9657875-9658017,9658702-9658819,9659824-9659914,
           9660055-9660144,9660236-9660336,9660752-9660892
          Length = 227

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 122 SVAQQNPYLLQACRKELRSNNWEQIMHGHSNPTTAPPQLLHQYI 253
           +V   +PY + A   +++   W   + G  N T  PP+L++QY+
Sbjct: 132 AVVISHPYAVTA--DDMKEVKWPIEILGGQNDTVTPPRLVYQYV 173


>08_01_0857 +
           8411305-8411349,8412919-8413009,8413196-8413285,
           8413377-8413477,8413894-8414034
          Length = 155

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 122 SVAQQNPYLLQACRKELRSNNWEQIMHGHSNPTTAPPQLLHQYI 253
           +V   +PY + A   +++   W   + G  N T  PP+L++QY+
Sbjct: 60  AVVISHPYAVTA--DDMKEVKWPIEILGGQNDTVTPPRLVYQYV 101


>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
          Length = 821

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 223 SSWVRVTVHDLFPVIGTKFLTAGLEEIGILLRDRTYYL 110
           ++WV+  V   +P +  KF+T G +   + LR+  Y L
Sbjct: 582 AAWVKTNVQAFYPAVSFKFITVGNQ---VALREMRYIL 616


>03_02_0021 -
           5049705-5049713,5049744-5049770,5049877-5049940,
           5050019-5050806,5050888-5051046,5051778-5052419
          Length = 562

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +2

Query: 95  KINTMKIICSVAQQNPYLLQACRKELRSNNWEQIMHGHSNPTTAPPQLLHQYI*NNSSKK 274
           K  T   IC V       L+   KEL  N W+ ++  +  P T P +        +S   
Sbjct: 305 KRKTQAEICKVTGLTEVTLRKVYKELLEN-WDDLLPPNYTPATPPEKAFPMTTIYSSRSS 363

Query: 275 LSKFAYKENPTKKLKINGS 331
             K  Y++      K+  S
Sbjct: 364 SGKDLYQDKQLDSAKLKSS 382


>02_05_0785 -
           31730300-31730701,31730785-31730856,31730940-31732864,
           31733000-31733150,31733944-31734009,31734247-31734645
          Length = 1004

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 205 TVHDLFPVIGTKFLTAGLEEIGILLRDRTYYLH 107
           T  DL   I  + L+ G+  IG+ + D +Y++H
Sbjct: 415 TATDLDDAISIEMLSGGIVRIGVHIADVSYFVH 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,874
Number of Sequences: 37544
Number of extensions: 207091
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)