Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a07
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    27   8.3  
AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    27   8.3  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 411 FFYNKIIFSYTIFNSKLLKFIFYY 482
           FFY  ++FSY +F++ +L FI  Y
Sbjct: 55  FFYKMVLFSYFLFSTFILYFIVLY 78


>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 149 LQACRKELRSNNWEQIMHGH----SNPTTAPPQLLHQYI*NNSSKKLSKFAYKENPTKKL 316
           +Q  R    + N   I  GH    +  +  P +   +Y   N+ K   KF    NPTK  
Sbjct: 125 IQRTRNNQNAGNTPNIYKGHYMFEATESYEPSRRSSRY---NTKKIEGKFMCSYNPTKCY 181

Query: 317 KINGSIVSIFYNI 355
           K+ GS+V +  +I
Sbjct: 182 KLCGSVVEVINHI 194


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 149 LQACRKELRSNNWEQIMHGH----SNPTTAPPQLLHQYI*NNSSKKLSKFAYKENPTKKL 316
           +Q  R    + N   I  GH    +  +  P +   +Y   N+ K   KF    NPTK  
Sbjct: 124 IQRTRNNQNAGNTPNIYKGHYMFEATESYEPSRRSSRY---NTKKIEGKFMCSYNPTKCY 180

Query: 317 KINGSIVSIFYNI 355
           K+ GS+V +  +I
Sbjct: 181 KLCGSVVEVINHI 193


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 149 LQACRKELRSNNWEQIMHGH----SNPTTAPPQLLHQYI*NNSSKKLSKFAYKENPTKKL 316
           +Q  R    + N   I  GH    +  +  P +   +Y   N+ K   KF    NPTK  
Sbjct: 125 IQRTRNNQNAGNTPNIYKGHYMFEATESYEPSRRSSRY---NTKKIEGKFMCSYNPTKCY 181

Query: 317 KINGSIVSIFYNI 355
           K+ GS+V +  +I
Sbjct: 182 KLCGSVVEVINHI 194


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 98  INTMKIICSVAQQNPYLLQACRKELRSNNWEQIMHGHSNPTT 223
           +NT+ + C   +    L+++  + +    W+ I+  H  PTT
Sbjct: 542 VNTVNLPCLKVKSILLLIESTNERILVKQWKNILDEHFTPTT 583


>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 417 YNKIIFSYTIFNSKLLKFIFYY*LDFL*KRILLVFFVKQLFIF 545
           YN I F+    + KLLKF++Y       + I+ VFF   LF++
Sbjct: 133 YNSIPFNKHKISGKLLKFVYY-----TVRVIICVFFSSILFLY 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,405,082
Number of Sequences: 27780
Number of extensions: 221163
Number of successful extensions: 597
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)