Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte18a07
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   1.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 182 NWEQIMHGHSNPTTAPPQLL 241
           +W  +M  HSN T + P+++
Sbjct: 270 SWRNLMDEHSNRTNSDPRMI 289


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 402 PHAFFYNKIIFSYTIFNSKLLKFI 473
           PH F Y ++  +YT F  +   F+
Sbjct: 369 PHLFLYPEVSSTYTGFGIQSTDFV 392


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 329 SIVSIFYNINSYE*KGYFENILKCAP 406
           +I  I YN+ S + +  F+   +C+P
Sbjct: 310 TINPILYNVMSAKYRNAFKETCRCSP 335


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 275 LSKFAYKENPTKKLKINGSIVSIFYNINSYE 367
           LS      N   K   N +   ++YNIN  E
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLYYNINYIE 115


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 197 MHGHSNPTTAPPQL 238
           +HG    T APPQL
Sbjct: 444 IHGSPATTAAPPQL 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,994
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)