Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p24
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 29 0.50
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 0.88
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.5
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 27 2.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 4.7
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 6.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.2
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 8.2
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.50
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 92 YLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLEKPFRMNKLNL 271
Y+H+V N + +F L+ SG C N +T+ A + F+T+ +N+
Sbjct: 27 YVHEVMESNPSTNLILFPELITSGYECGNTFTQIAEIAGEGP--SFKTMSNLAAKYHVNI 84
Query: 272 LW 277
++
Sbjct: 85 IY 86
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/64 (21%), Positives = 27/64 (42%)
Frame = +2
Query: 194 ANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRF 373
+ +K K T + +NK +WT+ +T+ + S Y L ++ + K F
Sbjct: 245 SEKKEKKTKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHF 304
Query: 374 KSDG 385
+G
Sbjct: 305 SVEG 308
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 62 INSKVYINIKYLHKVFTMNTHLMIFVFISLLMSGIVCENKYTRSANEKNDDAKVDFRTLE 241
I S + ++ L K+ + ++ + + LLM+ +VC Y R +++ +A V + L+
Sbjct: 370 IPSTLSFFLEILTKLLEIYSYRISAHHVELLMALVVCSRNYMRCNLQEHHNAIV--QALQ 427
Query: 242 KPFRMNKLNL 271
F + KLN+
Sbjct: 428 NLFTLIKLNI 437
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 278 TKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNI 439
TK + + K L++ L L E K+ +SD +G K + +KLS++
Sbjct: 637 TKLKSTCAKASRKRLFNQLELSPPESFMEKKARSDENQLDGNKIKDDNQKLSSV 690
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +2
Query: 176 NKYTRSANEKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHD 346
NK R N +ND A F +N LNL WT E + L +LHD
Sbjct: 253 NKNIRQKNTENDAAG---------FTINDLNLAWTIEPHAFVEQYPQKLRMPFLLHD 300
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 308 KLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADR 487
KLK++ + D++ + R K DKE L+ +L + S I V +H +
Sbjct: 507 KLKTMKDGKAVVDEKAVLSDRSKKIKVDKEALESYKLNSEQSGIYRVNYSADHLKKLSQI 566
Query: 488 QKDHPAFNSAMD 523
+ P + S D
Sbjct: 567 AVEKPDYLSVED 578
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 6.2
Identities = 21/93 (22%), Positives = 44/93 (47%)
Frame = +2
Query: 200 EKNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKS 379
E ++++K+ R +EK ++ L+L + + K+ + S + H K + + K+ +
Sbjct: 249 ELSNESKLAIRCIEKNLKLILLHLAKSTGASSSSVEKIHAYLSGQIYHTKVDESLKKRQY 308
Query: 380 DGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPK 478
+G + A R K S + S L+E P+
Sbjct: 309 EG----NISAASKRVKSSAVQS---LVERMQPQ 334
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.2
Identities = 6/28 (21%), Positives = 19/28 (67%)
Frame = +2
Query: 41 YDTFMKLINSKVYINIKYLHKVFTMNTH 124
Y+ + + + K+++N+ YL+ ++++ H
Sbjct: 1454 YNLVLDIDSPKIFVNLNYLYSIWSIFVH 1481
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 326 SDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPK 478
SD L + + + Y R +G + + R S I+ V GLL+HFD K
Sbjct: 348 SDEELFEDDPLEYVRRDLEGSNSDS-------RARSAIVLVRGLLDHFDQK 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,024
Number of Sequences: 5004
Number of extensions: 38925
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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