Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p24
(588 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051766-1|AAK93190.1| 379|Drosophila melanogaster LD29322p pro... 145 4e-35
AE014297-1046|AAF54455.1| 379|Drosophila melanogaster CG8507-PA... 145 4e-35
BT025084-1|ABE73255.1| 910|Drosophila melanogaster IP14863p pro... 30 2.7
AE014134-1517|AAF52679.3| 1012|Drosophila melanogaster CG13401-P... 30 2.7
AY051941-1|AAK93365.1| 565|Drosophila melanogaster LD41932p pro... 29 4.7
AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-P... 29 4.7
AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro... 29 6.2
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein... 29 6.2
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu... 29 6.2
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA... 29 6.2
>AY051766-1|AAK93190.1| 379|Drosophila melanogaster LD29322p
protein.
Length = 379
Score = 145 bits (351), Expect = 4e-35
Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 8/136 (5%)
Frame = +2
Query: 179 KYTRSANE------KNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLML 340
KY++ AN+ K + DF+++++PFRM KLNL+W KAQ RLTEPKLKSLY +L +
Sbjct: 31 KYSKEANDPHFQQVKQEKYDPDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKI 90
Query: 341 HDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQKDHP--AFNS 514
HDKEEI +K+ S DK+GLK ELRRKL IMS Y LLEHFD D +K P F+
Sbjct: 91 HDKEEIAWKQLNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD 150
Query: 515 AMDDHINRSIFKDKKI 562
A + H N+S+FKDKK+
Sbjct: 151 AEERHRNKSLFKDKKL 166
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 248 FRMNKLNLLWTKAQ-QRLTEPKLKSLYSDLMLH-DKEEITYKRFKSDG 385
F+ KLN LW KA+ T +LKSL + H DK ++ Y ++ G
Sbjct: 161 FKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVYYSLLENIG 208
>AE014297-1046|AAF54455.1| 379|Drosophila melanogaster CG8507-PA
protein.
Length = 379
Score = 145 bits (351), Expect = 4e-35
Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 8/136 (5%)
Frame = +2
Query: 179 KYTRSANE------KNDDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLML 340
KY++ AN+ K + DF+++++PFRM KLNL+W KAQ RLTEPKLKSLY +L +
Sbjct: 31 KYSKEANDPHFQQVKQEKYDPDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKI 90
Query: 341 HDKEEITYKRFKSDGGDKEGLKEAELRRKLSNIMSVYGLLEHFDPKADRQKDHP--AFNS 514
HDKEEI +K+ S DK+GLK ELRRKL IMS Y LLEHFD D +K P F+
Sbjct: 91 HDKEEIAWKQLNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD 150
Query: 515 AMDDHINRSIFKDKKI 562
A + H N+S+FKDKK+
Sbjct: 151 AEERHRNKSLFKDKKL 166
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 248 FRMNKLNLLWTKAQ-QRLTEPKLKSLYSDLMLH-DKEEITYKRFKSDG 385
F+ KLN LW KA+ T +LKSL + H DK ++ Y ++ G
Sbjct: 161 FKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVYYSLLENIG 208
>BT025084-1|ABE73255.1| 910|Drosophila melanogaster IP14863p
protein.
Length = 910
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 388 TPITFKPFVCNFFFIMQHQITV 323
TPITF PFV FF +Q+ T+
Sbjct: 115 TPITFDPFVVEFFLALQNGATL 136
>AE014134-1517|AAF52679.3| 1012|Drosophila melanogaster CG13401-PA,
isoform A protein.
Length = 1012
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 388 TPITFKPFVCNFFFIMQHQITV 323
TPITF PFV FF +Q+ T+
Sbjct: 217 TPITFDPFVVEFFLALQNGATL 238
>AY051941-1|AAK93365.1| 565|Drosophila melanogaster LD41932p
protein.
Length = 565
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 281 KAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKL 430
K +++ E KLK + L +KEE+ K+ K + +E LKE E + KL
Sbjct: 18 KIKEKEREEKLKKEKEE-KLKEKEELLKKKEKEEKEREEKLKEKERQEKL 66
>AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-PA
protein.
Length = 1168
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 281 KAQQRLTEPKLKSLYSDLMLHDKEEITYKRFKSDGGDKEGLKEAELRRKL 430
K +++ E KLK + L +KEE+ K+ K + +E LKE E + KL
Sbjct: 621 KIKEKEREEKLKKEKEE-KLKEKEELLKKKEKEEKEREEKLKEKERQEKL 669
>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = +2
Query: 209 DDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEI------TYKR 370
D AK+D E +MNK L+ KA++++T K K + L E ++
Sbjct: 299 DLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADNAHQSDIRK 358
Query: 371 FKSDGGDKEGLK-------EAELRRKLSNIMSVYGLLEHFDP-KADRQKDHPAFNSAMDD 526
+ D E LK E E +R+ ++ GL++ +D K + + + S +D
Sbjct: 359 LEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSELDS 418
Query: 527 HINR 538
+NR
Sbjct: 419 -VNR 421
>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = +2
Query: 209 DDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEI------TYKR 370
D AK+D E +MNK L+ KA++++T K K + L E ++
Sbjct: 299 DLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADNAHQSDIRK 358
Query: 371 FKSDGGDKEGLK-------EAELRRKLSNIMSVYGLLEHFDP-KADRQKDHPAFNSAMDD 526
+ D E LK E E +R+ ++ GL++ +D K + + + S +D
Sbjct: 359 LEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSELDS 418
Query: 527 HINR 538
+NR
Sbjct: 419 -VNR 421
>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = +2
Query: 209 DDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEI------TYKR 370
D AK+D E +MNK L+ KA++++T K K + L E ++
Sbjct: 299 DLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADNAHQSDIRK 358
Query: 371 FKSDGGDKEGLK-------EAELRRKLSNIMSVYGLLEHFDP-KADRQKDHPAFNSAMDD 526
+ D E LK E E +R+ ++ GL++ +D K + + + S +D
Sbjct: 359 LEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSELDS 418
Query: 527 HINR 538
+NR
Sbjct: 419 -VNR 421
>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
protein.
Length = 1238
Score = 28.7 bits (61), Expect = 6.2
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Frame = +2
Query: 209 DDAKVDFRTLEKPFRMNKLNLLWTKAQQRLTEPKLKSLYSDLMLHDKEEI------TYKR 370
D AK+D E +MNK L+ KA++++T K K + L E ++
Sbjct: 299 DLAKIDQEIREFETQMNKRRPLYIKAKEKVTHCKKKLISLQKTLETAREADNAHQSDIRK 358
Query: 371 FKSDGGDKEGLK-------EAELRRKLSNIMSVYGLLEHFDP-KADRQKDHPAFNSAMDD 526
+ D E LK E E +R+ ++ GL++ +D K + + + S +D
Sbjct: 359 LEKQLADVEALKKRFEDEIENESQRRGKSVNMEEGLVQEYDRLKQEAEATATQYRSELDS 418
Query: 527 HINR 538
+NR
Sbjct: 419 -VNR 421
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,499,363
Number of Sequences: 53049
Number of extensions: 373571
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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