Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p15
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   2.4  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   7.4  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   9.8  
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    24   9.8  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    24   9.8  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    24   9.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.8  

>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 136 DFEKFWSSPYISSFLSF 86
           +FEK WS+ +  SFLSF
Sbjct: 78  EFEKIWSTTFSISFLSF 94


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 175 VMCINSVSRSQAQEYTSKSLQESRTSVGLL*MRILLSSTAI 297
           V+ +N  S  +  +Y SKS QE +  V  L ++++ SST +
Sbjct: 490 VLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTEL 530


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 96  KEEMYGEDQNFSKSKKMVK--TNSNKCTCNVHQQCQPESGPGVHFQESPRV 242
           K+E   E+Q+FS SK+ VK      +   NV  +   ++   V+    P V
Sbjct: 123 KDEASSEEQSFSSSKEEVKPIVQDRETKSNVEHKSTSQANDAVNKSFLPSV 173


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 57  SKRICVGLPKKDRKEEMYGEDQNFSKSKK 143
           SK I + L KK+++EE+   ++  +K KK
Sbjct: 99  SKNIELKLQKKEKEEELRNLEEEKAKKKK 127


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 204 SGPGVHFQESPRVKNICRFTIDAYFT*LNGNCHD*TKYLDI 326
           S  GVHF +SP + N C  +    F  +  +      Y+D+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSVKRLGTYIDV 152


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  IRDPGRTSKRICVGLPKKDRK 98
           +R PGR  K I +G+P K  +
Sbjct: 432 LRRPGRLEKEIEIGIPDKSAR 452


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 81  PKKDRKEEMYGEDQNFSKSKKMVKTNSNKCTCNVHQQ 191
           P  DR      + ++ SKSK++V+  S+ C    H +
Sbjct: 466 PLIDRMVNQSPDTRSVSKSKRLVRETSSGCLFKNHSK 502


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 145 IFFDFEKFWSSPYISSFLSFF 83
           I+F F  F  SPY+  ++S F
Sbjct: 83  IYFFFYSFLCSPYLFKYISLF 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,902
Number of Sequences: 5004
Number of extensions: 29312
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)