Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p15
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0214 + 32411341-32411347,32412642-32412878,32412955-324132...    29   1.4  
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242...    27   9.7  

>03_06_0214 +
           32411341-32411347,32412642-32412878,32412955-32413226,
           32413757-32413849,32413928-32414131
          Length = 270

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 90  DRKEEMYGEDQNFSKSKKMVKTNSNKCTCNVHQQCQPESGPGVHFQESPRVKN 248
           DR   +YGE   F      +KT + K      +    E GPG HF E+P+  N
Sbjct: 206 DRTGMLYGELARFVLRLLGIKTKAKKGGVQGAETSSFE-GPGHHFAEAPKANN 257


>12_02_1263 +
           27423411-27423464,27423985-27424104,27424200-27424298,
           27424405-27424542,27424647-27424706,27424865-27425044,
           27425132-27425338,27425415-27425534,27425609-27425728,
           27425819-27425941,27426074-27426178,27426379-27426523,
           27426967-27427131,27427228-27427466,27427553-27427585,
           27427894-27427975,27428100-27428260,27428422-27428607,
           27428700-27428882,27428969-27429147,27429386-27429482
          Length = 931

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 311 GSVMTIAVELSKIRIYSKPTDVLDSWRLLEVYS 213
           G++MTI    SK R+  KP+ + DSW+L E+++
Sbjct: 664 GTIMTI----SKDRV--KPSPLPDSWKLAEIFT 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,898
Number of Sequences: 37544
Number of extensions: 155930
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)