Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p15
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen prot...    29   2.1  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    28   3.7  
Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    27   6.5  

>AF036699-4|AAB88358.1|  281|Caenorhabditis elegans Collagen protein
           104 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 102 EMYGEDQNFSKSKKMVKTNSNKCTCNVHQQCQP-ESGP 212
           E +GE       KK   T   +C CN +  C P E+GP
Sbjct: 60  ETFGESVVPFARKKRQTTRPGECVCNSNSACPPGEAGP 97


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 39  RDPGRTSKRICVGLPKKDRKEEMYGEDQNFSKSKKMVK 152
           ++P  T+++   G  KKD KEE   E ++  + +K  K
Sbjct: 875 KEPAETTEKAAEGEEKKDEKEEKRDEKKDEKREEKREK 912


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 39  RDPGRTSKRICVGLPKKDRKEEMYGEDQNFSKSKKMVK 152
           ++P  T+++   G  KKD KEE   E ++  + +K  K
Sbjct: 875 KEPAETTEKAAEGEEKKDEKEEKRDEKKDEKREEKREK 912


>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 141 KMVKTNSNKCT---CNVHQQCQPESGPGVHFQESPRVKNICRFT 263
           K VK   N CT   C    QC  ++G G  +  S +  ++C FT
Sbjct: 47  KCVKDYPNSCTTIKCQAGYQCTIKNGKGGCYPVSNKSLDLCVFT 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,019
Number of Sequences: 27780
Number of extensions: 169234
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)