Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p11
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 28 1.3
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 1.7
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 26 5.3
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 7.0
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce... 25 9.2
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo... 25 9.2
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 25 9.2
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 9.2
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 130 KVKAREIKFNDANRLYCIQVRVES*NFFPKLYPADTLRIIYRHMDLKYIRFTI 288
K+KA E DA+ Q R++ N FPKL D R+I +Y+R +
Sbjct: 346 KLKAYERNMTDASPEEKQQFRIKLLNQFPKLEDIDEDRMIMVFTGPEYVRLQL 398
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 11 NTRNKLNYLDSTKNRKMCTLKIKHKKLLSIYKHLSKNFSSRSK 139
NT N L +L S++NRK + + + + LSKN S K
Sbjct: 624 NTLNDLRHLKSSRNRKATSNETQSSSNSTETSKLSKNVSESGK 666
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 35 LDSTKNRKMCTLKIKHKKLLSIYKHLSKNFSSRSKRVKLNSTMQI 169
L + + RK +I K L + KH +KN + +LNST+Q+
Sbjct: 465 LSTLEERKKAFDEIVEKILTNYGKHNAKNMNFTQLLHELNSTLQL 509
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 205 NFFPKLYPADTLRIIYRHMDLKYIRFTIVWIMPVSV 312
N K+Y AD + HMDLK RF ++ PV +
Sbjct: 2201 NLVQKIYCAD----YFNHMDLKASRFMDIYEYPVQL 2232
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +2
Query: 299 CLFLFHSSHDISIVRSLTLADSIRTKRILLILTNRYDMPMRITSSNIVYRLISKYRFRFT 478
C FLFH+ + + +L DS+++K+ + D + S + + I K +
Sbjct: 22 CFFLFHNDENRTTTSNL---DSVKSKKKRRKTIS--DASIVSNGSLVSHPSIDKGKLSIL 76
Query: 479 NRYDMAMRITS 511
RY M+ R+T+
Sbjct: 77 KRYKMSHRLTA 87
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 5 NTNTRNKLNYLDSTKNRKMCTLKIKHKKLLSIYKHLSKNF--SSRSKRVKLNS 157
+T N+L YLDS + R +I+ ++ ++HL N ++ KR ++NS
Sbjct: 355 STREENRLKYLDSLRERYKHIPEIRR---IARHRHLPTNVKKAAEIKREEINS 404
>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 122
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 11 NTRNKLNYLDSTKNRKMCTLKIKHKKLLSIYKHLSKNFSSRS--KRVK 148
N N+L ++ KN+K L ++ KK +I + L+ SR K++K
Sbjct: 61 NESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIK 108
>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
Agn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 589 YIDIESIYDLYHPTPK 636
YI+ ES++ Y PTPK
Sbjct: 308 YINFESLFYWYRPTPK 323
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 475 ESKSIFRYQPIHDIARCDAHRHIVPI 398
ES +F Y P+H + DA ++P+
Sbjct: 225 ESNYLFAYDPLHGLQWVDADSWMLPV 250
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 523 VSADIDI*ISCGAISDSTILLRYIDI 600
VSA +DI + C +D++I LR +D+
Sbjct: 325 VSAQLDIILKCLVDTDTSIRLRALDL 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,308
Number of Sequences: 5004
Number of extensions: 51301
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -