Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p11
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0210 + 32386438-32386452,32386543-32386617,32386716-323868...    29   3.1  
06_01_0040 - 393818-393938,394331-394389,394595-394756,394875-39...    27   9.5  

>03_06_0210 +
           32386438-32386452,32386543-32386617,32386716-32386832,
           32387006-32387076,32387202-32387496,32387594-32387883,
           32388122-32388137
          Length = 292

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 5   NTNTRNKLNYLDSTKNRKMCTLKIKHKKLLS----IYKHLSKNFSSRSKRVKLNSTMQIG 172
           N   RN+  Y+  +   K CT ++K K L+     +Y  L   + +  + VK  S  Q+ 
Sbjct: 45  NAYKRNRQAYIKDSSISKNCTQEVKVKYLMRAPIYVYYELDNFYQNHRRYVKSRSDKQLR 104

Query: 173 Y 175
           Y
Sbjct: 105 Y 105


>06_01_0040 -
           393818-393938,394331-394389,394595-394756,394875-395085,
           395174-395290,395794-395859,396020-396292,397410-397492,
           398322-398327,398738-398797,399093-399137,399530-399639,
           400412-400510,400599-400796,401463-401517,401571-401628,
           402191-402360
          Length = 630

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = +2

Query: 23  KLNYLDSTKNRKMCTLKIKHKKLLSIYKHLSKNFSSRSKRVKLNSTMQIGYTAFKLGSKV 202
           KL+ + S++N  +CTL    +   S+Y  +S     + K+ +L + +Q G +     SKV
Sbjct: 273 KLSKIKSSRNSVVCTLSFCLEASTSVY--ISSKKKKKKKKKRLGAMVQ-GASGGGWSSKV 329

Query: 203 ETSFLNCILLI 235
           E   +   LL+
Sbjct: 330 EEGVIVGGLLV 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,873
Number of Sequences: 37544
Number of extensions: 272794
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)