Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p10
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   1.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   2.0  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   4.7  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   6.2  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.2  

>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 412 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 311
           LM   + ++++ M   +P +TL +DGLS F  LG
Sbjct: 98  LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 309  FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 440
            F  N++    S CS+    NL+ + R ++ N+  R+G  HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 REYHFPLDRFIVSEHQGQHGN 202
           R Y +P D F+VS  + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 FHELKNSRNPVILYCHGTAVAANFVSNL 566
           FH   N + PV ++ HG   + N  S+L
Sbjct: 108 FHPPNNGKLPVFIFSHGLVGSRNVYSSL 135


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 313 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 402
           R + TTI R  A++   H G+TSTLS  RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,446
Number of Sequences: 5004
Number of extensions: 37951
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)