Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p09
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 36 0.007
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 34 0.016
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 32 0.086
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.11
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.15
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 31 0.20
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 30 0.35
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.46
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 29 0.61
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.61
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 29 0.81
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 1.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.5
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.3
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 26 4.3
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 4.3
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 4.3
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 4.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 5.7
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 5.7
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.7
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.7
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 7.5
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 7.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.5
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 7.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 9.9
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 9.9
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +2
Query: 269 VCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKN-----TDHPDENSKENRVSIK 433
VC N + + A P SVI +++N N +E E KN T +P E+ +E + +
Sbjct: 50 VCYNHLQDRGFATPISVIKSVTNKID-TNKLEAKDESKNVEKDATGNPQESKQEPNLEV- 107
Query: 434 EQHTEEELAVDTKDVNGDEEN 496
Q TE+E VD+ + N
Sbjct: 108 -QQTEKEKDVDSASAENESIN 127
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 290 EEEPALPSSVIPTLSNTSQKDN----NIEGSLEEKNTDHPDENSKENRVSIKEQHTEEEL 457
EEE PS + +SN QKD IE S EE ++H S ++ +E+ EEL
Sbjct: 68 EEENGKPSQISAFISNGHQKDTLENPAIESSYEE--SEHARNVSDSESITSQEEEEYEEL 125
Query: 458 AVDTKD 475
+D D
Sbjct: 126 EIDDAD 131
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 31.9 bits (69), Expect = 0.086
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 335 NTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELA 460
++S+ D+ E S+E K T++ DE+ K V I E +EE+A
Sbjct: 105 SSSKSDSEEESSMEPKTTEY-DEDDKHVTVEIVEDDDDEEIA 145
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 398 DENSKENRVSIKEQHTEEELAVD--TKDVNGDEENVDFKLTGDNEEVLEATEAEG 556
DE S + S + +EEE +++ T + + D+++V ++ D+++ A EG
Sbjct: 96 DEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDDEEIAYPKEG 150
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 293 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTK 472
+E PS+ PTL + S +++ S + + T D V+ E +E+E A
Sbjct: 366 DEDDQPSADSPTLMHPSDLISSLVNS-QNQTTSVSDNTGPNENVNEAEHISEDEQASTAT 424
Query: 473 DVNGDEEN 496
DVNG +N
Sbjct: 425 DVNGISDN 432
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 176 IIILRKNFRKPRCCDNYLV*NRITSNSVKILVCNNFIMEEEPALPS-SVIPTLSNTSQKD 352
+I++ K + K RC ++ +TS ++ +V N + P LPS ++P L ++S
Sbjct: 192 LIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQMLPHLQDSSTMT 251
Query: 353 NNIEGS 370
+ ++ S
Sbjct: 252 DGLDVS 257
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 344 QKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFK 508
+ D +E S E K D +EN + + ++ E EE VDT + DEE K
Sbjct: 211 ENDEILEDSKESK--DENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVK 263
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 29.9 bits (64), Expect = 0.35
Identities = 22/93 (23%), Positives = 36/93 (38%)
Frame = +2
Query: 287 MEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVD 466
M ++ L S +S D+N + E + + D SKEN V + E
Sbjct: 1012 MSKKVKLDFSSDSNVSERGDYDDNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNSSESS 1071
Query: 467 TKDVNGDEENVDFKLTGDNEEVLEATEAEGKGE 565
+ V E D L DN ++ + +E + E
Sbjct: 1072 NESVYSLVEESDASLAADNMDIEDISEESDREE 1104
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.46
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Frame = +2
Query: 299 PALPSSVIPTLSN--TSQKDNNIEGSLEEKNTDHPDENSKEN-RVS---IKEQHTEEELA 460
P P L N SQKD N SL+ D +K+N R I E+ ++ LA
Sbjct: 475 PGTPKITFGKLKNHSQSQKDYNSSTSLDSSEESEVDVENKQNVRTKYDRIFERKNQDVLA 534
Query: 461 VDTK---DVNGDEENVDF 505
+ +VN DE++ DF
Sbjct: 535 AHRQRLVEVNSDEDDGDF 552
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +2
Query: 410 KENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEAT 544
KE+ + +++ + ELA +TK+ + E +VD K + E+++ +T
Sbjct: 317 KEHPIQLEDSNNSAELAKETKEEDDSENSVDKK--ENEEDIISST 359
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 29.1 bits (62), Expect = 0.61
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 284 IMEEEPALPSSVIPTLSNTSQK--DNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEEL 457
++ E+P S+ LS S++ +++ S E K+T+ P E V + E
Sbjct: 221 MLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVNLRSEQ 280
Query: 458 AVDTKDVNGDEENVDFKL-TGDNEEVLEATE 547
+ + + EN DF L T +++ +ATE
Sbjct: 281 KLQPSFGHPEFENEDFDLETSEDDSSDDATE 311
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 28.7 bits (61), Expect = 0.81
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 254 SVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHP-DENSKE 415
SV I N+ +++ A+ S VI T + +KDN +E ++ + HP N KE
Sbjct: 314 SVSIPDINSLSLKDYSAVVSRVISTDTLEVRKDNGVECRIQLSSIRHPRPSNEKE 368
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +2
Query: 305 LPSSVIPTLSNTS---QKDNNIEGSLEEKNTDHPDENSKENRVSIKEQ 439
LPS V+PT SN+S Q N+ ++ + D+ S N + Q
Sbjct: 465 LPSPVVPTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQ 512
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 326 TLSNTSQKDNNIEGSLEEKNTDHPDENSK--ENRVSIKEQHTEEEL 457
+L SQ +N+++ + EKN + NSK E R ++ + E E+
Sbjct: 537 SLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANKENEI 582
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 8 NYYCPRLFLCVFMLLNFETYVLQKSIRK---EMFAEFIDILDFILIESNSL 151
NY+ P++F C+F LL T+ + S + E+ +IL+F + S SL
Sbjct: 973 NYFEPQMFACIFPLLYDLTFNITNSDEEDEAELQLLVTEILEFQALYSASL 1023
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 311 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDE 490
+S + SN+ D S E N ++ +E E+E A D DVN +
Sbjct: 386 NSGLQLFSNSDAIDTVDRESSEIDNVGRKTRRQPTGLIN-QELIKEDEGAFDDSDVNSAD 444
Query: 491 ENVDFKLTG 517
EN D TG
Sbjct: 445 ENEDVDFTG 453
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = +2
Query: 356 NIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVL 535
N E + + +D E + + H + + DEEN D + G+NEE+
Sbjct: 4172 NEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELG 4231
Query: 536 EATEAEGKG 562
E A G
Sbjct: 4232 EEDGAAESG 4240
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 275 NNFIMEEEPALPSSVIPTLSNTSQKDNNIEGS--LEEKNTDHPDENSKENRVSIKEQHTE 448
NN S + L ++ K+ E S +E + D+ E + +N + K HTE
Sbjct: 60 NNIANSSSQQSVSEIDIQLPSSEPKEGVKEESNLIESNSLDNVQEINPQNTIGDKSAHTE 119
Query: 449 EELAVD 466
EE + D
Sbjct: 120 EESSND 125
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +2
Query: 314 SVIPTLSNTSQKDNNIE---GSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNG 484
++ L +TS K ++ + E+K + DEN+ +K + + + L +DV+
Sbjct: 627 TITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDS 686
Query: 485 DEENVDFKLTGD---NEEVLEATEAEGK 559
E+N+ L D +EE L ++ E K
Sbjct: 687 LEKNIQ-TLKEDLRKSEEALRFSKLEAK 713
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 314 SVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKDVNGDEE 493
+++ ++SQ +N+E ++ EKN + + N K R + ++ ++ + DTK EE
Sbjct: 976 NIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMR--LDDELLLKQRSYDTKVQELREE 1033
Query: 494 NVDFK 508
N K
Sbjct: 1034 NASLK 1038
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = +2
Query: 293 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIK-EQHT-EEELAVD 466
E+PA P+ L KD+ +++ D DE+ +EN+ S++ + H+ ++ +
Sbjct: 10 EDPAKPAEFDFPLG----KDSQSSSKPKKRFDDEEDEDEEENKESLQNDSHSVSQKSSSS 65
Query: 467 TKDVNGDEE--NVDFKLTGDN-EEVLEATEAEGKGE 565
+++ G + + K+ N E+ ++A+EA K E
Sbjct: 66 SQNDQGSNKMTRIQQKIQERNFEKAIKASEAAAKEE 101
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +2
Query: 401 ENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGE 565
EN + ++ + QH E + + DT++ E+ T D +E+ + +GE
Sbjct: 92 ENDLDEKLVLDGQHVEGDHSSDTEEEVVSEDQKQLNKTDDESTFIESHQIYIQGE 146
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 39 YLCY*ILRLMFYKKAFVRKCLQNLLIYSIS 128
Y+CY + L+F+ +F +C +L Y+ S
Sbjct: 94 YICYFSIFLLFFAISFQAECYYSLTAYATS 123
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 242 ITSNSVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLE-EKNTDHPD-ENSKE 415
+ +V++L N + EE +S I + + +++ +I + E N + +NS E
Sbjct: 119 LQDENVQVLNTNTITISEESEFHASKIAKIDSRNEEITHIPFETQTELNAAVVNLDNSME 178
Query: 416 NRVSIKEQHTEEELAVDT 469
+ SI + T ++ +VDT
Sbjct: 179 SSFSIVQNLTNKDSSVDT 196
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +2
Query: 362 EGSLEEKNTDHPDENSKENRVS-IK-EQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVL 535
+ L+ K +E KE R +K ++ EEL D D +EEN D E
Sbjct: 3 KSELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESES 62
Query: 536 EATEAEGKGEK 568
E + E + E+
Sbjct: 63 EELDNENEDER 73
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 25.8 bits (54), Expect = 5.7
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 341 SQKDNNIEGSLEEKNTDH-PDENSKENRV----SIKEQHTEEELAVDTKDVNGDEENVDF 505
S K+ + S E +H P++ + E ++E +EE + K V DEE+ D
Sbjct: 2 SAKEGSSHPSYAEIVREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLDEEDADA 61
Query: 506 KLTGDNEEVLEATEAEGKGEK 568
L + E + +E GEK
Sbjct: 62 FLHPEEAEAKKESEKPSDGEK 82
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 398 DENSKENRVSIKEQHTEEELAVDTKDVNG-DEENVDFKLTG-DNEEVLEAT 544
DE + +R IKE+ EEE++V ++ D+EN D L N+++ +A+
Sbjct: 250 DEWLRLHRTRIKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADAS 300
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 314 SVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSI 430
S+ P + +Q + + S EE+N D +++ K RVS+
Sbjct: 661 SLNPFIPRRNQPRDMFKTSAEEENEDEDEDDDKFRRVSL 699
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/75 (20%), Positives = 32/75 (42%)
Frame = +2
Query: 209 RCCDNYLV*NRITSNSVKILVCNNFIMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNT 388
R +NYLV S+K ++ +NF+ + +I + + + N + +
Sbjct: 378 RTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEKVDSANSNKNATNDIKDLQTE 437
Query: 389 DHPDENSKENRVSIK 433
+ +E + + SIK
Sbjct: 438 EIVEEGNSIDLESIK 452
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 311 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRVSIKE 436
SS TLS + K + EG+LE+ T +E + KE
Sbjct: 151 SSAQATLSFVASKPSQPEGNLEDIQTSSQEEEHDNEKDKTKE 192
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 293 EEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPD--ENSKENRVSIKE 436
EEP S P+ S +N+E S + TD P EN K + ++E
Sbjct: 656 EEPQKSKSEPPSAGINSTSMDNLESSGQALATDDPSQFENLKHRKKQLQE 705
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 398 DENSKENRVSIKEQHTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGEK 568
D+N +EN ++ KE E+ AVD K D E + +N+E E T + + E+
Sbjct: 33 DKNPEENVMNEKED--EDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEE 87
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 235 LNKIIITASGFSKIFP*YNYKVV 167
+N + A GF+++FP + Y VV
Sbjct: 683 VNDFVEAADGFAEVFPQHKYAVV 705
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 323 PTLSNTSQKDNNIEGSLEEKNTDHPDENSKE---NRVSIKEQHTEEELAVDTKDVNGDEE 493
P +SN + + + SLE+ + DE S + +++ + + LA D D+ ++E
Sbjct: 290 PEISNYDETEGKVNFSLEDSESLEFDEGSDDYDYAKLTTELVGNTDSLAEDEDDILEEDE 349
Query: 494 NVD 502
+ D
Sbjct: 350 DED 352
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = +2
Query: 353 NNIEGSLEEKNTDHPDENSKENRVSIKEQHTEEELAVDTKD 475
+N+ + ++++ D+ +EN +E + +E+ EE+ D +D
Sbjct: 86 DNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEED 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,477
Number of Sequences: 5004
Number of extensions: 40110
Number of successful extensions: 194
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -