Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p09
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          30   0.023
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.21 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.6  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 29.9 bits (64), Expect = 0.023
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 284 IMEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSKENRV 424
           + EE   LP  V  T+S+  Q   ++EGS +  + D P  +   N +
Sbjct: 38  VAEEVDPLPFGVENTISSVPQPPRSLEGSYDSSSGDSPVSSHSSNGI 84


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 440 HTEEELAVDTKDVNGDEENVDFKLTGDNEEVLEATEAEGKGEK 568
           H E ++ +  +++  D  +V FKLT DN    +A+ A  + EK
Sbjct: 157 HKELQIELVREEILFDTVHVTFKLTFDNRAFTQASLAMTREEK 199


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSK 412
           E E +    +I +LSN +  +NN + +    N ++ + N K
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 290 EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENSK 412
           E E +    +I +LSN +  +NN + +    N ++ + N K
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,510
Number of Sequences: 438
Number of extensions: 2666
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)