Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p08
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    47   3e-06
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   2.9  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   2.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   6.8  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 23/87 (26%), Positives = 47/87 (54%)
 Frame = +1

Query: 238 VVDGNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQT 417
           V + N+ +E   +  V++   ++  + P   + +FG+ E I+GY DL++ + Y    +  
Sbjct: 8   VHNANECIE---IVQVNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITYECPLMVP 64

Query: 418 YLGIDYTDKIEPSKSEGMKADDVEGAL 498
            L I Y++++ P    G++  D+EG L
Sbjct: 65  KLEISYSERLAP--DSGVEPTDIEGTL 89


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 8   IQGNGIEAKKICFLLFMKIFCSEK 79
           ++ N +E KK+C+ L++KI+ S K
Sbjct: 59  MESNNLELKKLCY-LYLKIYASVK 81


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 226 KHQSFCKINNGFCRSNSRV--NFIVNIFLILQKWRCVIYISTPIKSKFCFTLLTAENL 59
           K  S C++++ +  S  +   +F    F++L+   C++     IK+  C T    ENL
Sbjct: 59  KFHSHCQLSSSYTNSGQKSFKSFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKIENL 116


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 502 KVIAPGYITNLDHFVSQLKK-DESFTPHGKMLHAFNVTP 615
           K   PG I   +HF++ LK+  E      K+LH    TP
Sbjct: 315 KEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETP 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,636
Number of Sequences: 5004
Number of extensions: 59865
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)