Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p08
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    38   0.007
08_02_1225 + 25392023-25392028,25392611-25392683,25392972-25393168     30   1.7  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +1

Query: 259 LEFKLVRSVDDLEN-EETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDY 435
           L F   R+ D+  +   TS  P   +  FGE+  I+GY +L I ++ SA S   Y  I +
Sbjct: 57  LVFDTARNPDEAGSANSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISF 116

Query: 436 TDKIEPSKSEGMKADDVEGALTKVIAPGYITNLDHFVSQLKKD 564
               E +   G    D++  L  +     +   D F+    K+
Sbjct: 117 ----EETSDGGKGITDLKPVLQNIFGENLVEK-DEFLKTFSKE 154


>08_02_1225 + 25392023-25392028,25392611-25392683,25392972-25393168
          Length = 91

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = +1

Query: 454 SKSEGMKADDVEGALTKVIAPGYITNLDHFVSQLK----KDESFTPHGKMLHAF 603
           SK +G++  +VEG+L KV+  GY  N    +  L+    + E ++P  ++L A+
Sbjct: 23  SKVKGVERVEVEGSLQKVVVTGY-ANRSKILKALRRVGLRAEPWSPRNELLSAY 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,657,999
Number of Sequences: 37544
Number of extensions: 334963
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)