Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p07
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.28 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    28   1.1  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   1.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   5.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 95  IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRA 256
           ++K +NDA K AV S     N P        NPN +  +  A+   ++ +A  A
Sbjct: 459 VEKLKNDASKCAVESQSLMINDPSVSSTSFYNPNMEKLKNGAIKQAIEHQALNA 512


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 473 LPQKDLSFHQPIDGNLPSALYRPNSLEQLFNSLQNGTIDNET 598
           LP+K+  F + ID N P  +YRP S+     S+ +   DNE+
Sbjct: 143 LPKKN--FVEAIDANSPGFVYRPTSIRDRAYSISSNH-DNES 181


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 167 TEYYGNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDIQYTRLVNFIKE 340
           TEY  N  P     E + V  I  S  ++    +F+C    S   + +   L+  ++E
Sbjct: 59  TEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKEISISKEKKINSLLKLVRE 116


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 425 EHGGAAQVFLKRHSATLPQ--KDLSFHQPIDGNLPSALYRPNS 547
           E  G  ++FLK H   +P+  +D+     ++    ++LYRP S
Sbjct: 377 ERAGIYEIFLKAHLMNMPRLLRDIDSRHLLEFTQTASLYRPMS 419


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 104 TRNDAIKAAVASYLERRNYPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRA 256
           ++N A  AA   Y  +  YP   YY  N PN   A+      +    A+ A
Sbjct: 91  SQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQPVYAQPATSA 141


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 223 NCHLLSTLAIWVIVTVIFSIGIVSPF*IRS 134
           N +  +   IW+  TV+ +IG  S F I+S
Sbjct: 544 NTYASAFRVIWIFCTVVMAIGFASIFFIKS 573


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 95  IKKTRNDAIKAAVASYLERRNYPDTEYYGNNNPN--CQSAEQMAVSTI 232
           +KK   D    ++ S  E  ++P TE+ G+   +  C     ++VST+
Sbjct: 401 VKKMNEDGADTSLLSVSEVTSHPPTEWTGSPLAHVLCSDVVNLSVSTV 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,562
Number of Sequences: 5004
Number of extensions: 55586
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)