Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p07
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745... 33 0.28
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 30 1.5
02_05_0750 - 31479876-31480985 30 1.5
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 29 2.6
12_02_0063 + 13098519-13099585,13099759-13099906 29 4.6
08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238 29 4.6
06_03_0592 + 22585546-22588573,22588680-22589032 29 4.6
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637... 29 4.6
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 28 6.1
>03_02_0323 -
7450996-7451229,7451320-7451469,7451571-7451718,
7451816-7451895,7451990-7452150,7452417-7452665,
7452747-7453211,7453306-7453421,7453529-7453647,
7453749-7453834,7453970-7454120
Length = 652
Score = 32.7 bits (71), Expect = 0.28
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 660 PVKCRWIQYHQVFDSCNLFSGVSL 589
P +CRW +Y +++DS N FS +L
Sbjct: 292 PSRCRWFRYEELYDSTNHFSSENL 315
>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 74 YSMIMSLIKKTRNDAIKAAV--ASYLERRNYPDTEYYGNNNPN 196
Y + L+KK+ ND++ A+V A L+RR Y +++ N N
Sbjct: 988 YEARLFLVKKSNNDSVIASVEEARDLQRRKYELNQFFRNTKTN 1030
>02_05_0750 - 31479876-31480985
Length = 369
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 437 AAQVFLKRHSATLPQKDLSFHQPIDGNLPSALYRPNSLEQLFNSLQNGTIDNETPEKRLH 616
A + L+ + + ++DLS H L +AL P SL Q+F ++ + +R+H
Sbjct: 238 ATKSILQGYGVLVDERDLSMHAGFKEELHAALGAPGSLPQVFADGRH--LGGAEEVRRMH 295
Query: 617 ES 622
ES
Sbjct: 296 ES 297
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +3
Query: 276 VSTMIPLNTIYNTPG*STL*KK*ESRN*KMSFWDC*-----ALCYVIFI*RCYVGNTEVL 440
+ST + L + + S+ K S + +++WD +LC V+FI C + VL
Sbjct: 202 LSTQLTLLQLLHRTTSSSFEFKVASSSGVLAYWDAMIIKSVSLCLVVFILNCEYRYSSVL 261
Query: 441 HKCF*NDIQQHYHRKIYLSINQLMGIYP 524
C D Q HY + I + IYP
Sbjct: 262 ANCTFQDKQGHYKA---IEIKESKYIYP 286
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 503 PIDGNLPSALYRPNSL-EQLFNSLQNGTID--NETPEKR 610
P+DG LPS LY + L ++L ++LQ G + N+ P +R
Sbjct: 319 PVDGILPSQLYEYDELAKELEDALQGGGEEDGNDNPPRR 357
>08_01_0972 - 9789453-9790364,9790383-9790861,9791071-9792238
Length = 852
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 412 DATWGTRRCCTSV-FETTFSNITTER 486
DATW RCCT V F N+T+ R
Sbjct: 590 DATWRNFRCCTGVRFHKGLGNLTSLR 615
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 497 HQPIDGNLPSALYRPNSLEQLFNSLQN 577
H +DGN+PS +++ SL Q N N
Sbjct: 592 HNSLDGNIPSIIFKITSLSQEMNLSHN 618
>04_03_1033 +
21861826-21863046,21863153-21863380,21863474-21863704,
21863808-21864070,21864189-21864660
Length = 804
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 158 YPDTEYYGNNNPNCQSAEQMAVSTIVQSEASRANSILFSCINNDSSQYDI-QYTRLVNFI 334
+ D +G N+ N SAE+ V+S +A F + DS + D YT+L+N +
Sbjct: 323 HEDDVSFGGNSDNVSSAEK-EFQAKVKSTMEKA----FWDLVTDSMKGDKPDYTQLINLV 377
Query: 335 KEIR 346
KE+R
Sbjct: 378 KEVR 381
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 600 PKKDYMNQILDDIGSIYTLQDIETRPSIAAF 692
P+KDY+NQ+ DI S Y D I F
Sbjct: 214 PRKDYVNQLKTDIMSYYGYNDFLVEAFIEMF 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,719
Number of Sequences: 37544
Number of extensions: 313542
Number of successful extensions: 624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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