Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p05
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103... 30 1.8
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 29 2.4
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139... 29 3.1
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 3.1
11_01_0521 + 4083594-4083763,4083765-4083963,4084059-4084244,408... 28 7.2
10_01_0275 - 2904601-2904900,2905083-2905233,2905522-2905598,290... 28 7.2
>11_05_0035 -
18509505-18509615,18509840-18509950,18510318-18510377,
18510459-18510576,18510711-18510811,18510891-18510962,
18511069-18511156,18511423-18511557,18511655-18511767,
18511980-18512051,18512154-18512258,18512371-18512484,
18512587-18512681,18513539-18513686
Length = 480
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 409 ELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQTEKKNAIRKQMLTKAF 588
E++ LEL+ Y I K N+ + +E Q Q+ LN+ ++ + K++LT+ F
Sbjct: 105 EIETLELNFLTYMFQIMEKSNFKLLSDEEYDVAQSGQYLLNLPIKVDESKVDKKLLTRYF 164
Query: 589 K 591
K
Sbjct: 165 K 165
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 145 KLDEKYHDNKMNAKDHNNEXGNDVTPQL 228
K +E YH+ ++NAK ++E GN+ TPQL
Sbjct: 106 KNEEIYHE-QVNAKASHSEHGNNDTPQL 132
>08_01_0169 -
1396657-1396710,1396801-1396843,1397440-1397904,
1397999-1399395
Length = 652
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 346 PAHFESISNNSPTFSLTSNNQELDDLELSKSIYSTCIDNKMN 471
PAHF ++S N PTF+ +S+NQ + ++E + S+ ID N
Sbjct: 25 PAHFAALSFNYPTFA-SSHNQYI-EIEGNASVSVGYIDISAN 64
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
Frame = +1
Query: 229 IDDSEVKLKERIAQCRDIIESXXXXXXXXXXXQNALKVSPAHFESISNNSPTFSLTSNNQ 408
+D++ KL + R I E+ Q+ KV E + SL S Q
Sbjct: 1478 LDETSAKLVKEREVARAIEEAPPVVQQTEVLVQDTEKVDSLTAEVEELKT---SLQSEKQ 1534
Query: 409 ELDDLELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTL--NIAQTEKKNAIRKQMLTK 582
DDLE +S + K + +Q Q Y L +A E +N + +Q
Sbjct: 1535 RADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVS 1594
Query: 583 AFKLKLL 603
K+L
Sbjct: 1595 MAPSKIL 1601
>11_01_0521 +
4083594-4083763,4083765-4083963,4084059-4084244,
4085834-4086025,4086979-4087200,4089238-4089444,
4089681-4090082,4090201-4090230,4090307-4090318
Length = 539
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 388 SLTSNNQELDDL--ELSKSIYSTCIDNKMNYGVNINEYEKQLQRYQHTLNIAQTEKKNAI 561
+L S+N +L +L L + + DN M G+ +NE+ ++++R+Q + T+ ++ +
Sbjct: 139 TLRSDNSKLKNLAYSLKERVDELEKDNFM-LGLKMNEFAQEMERFQMQVGSTNTQMQDNL 197
Query: 562 RKQMLTKAFKLK 597
+ KAF+ K
Sbjct: 198 --DDMAKAFESK 207
>10_01_0275 -
2904601-2904900,2905083-2905233,2905522-2905598,
2907201-2907390,2908796-2908981,2910521-2910571,
2911476-2911885,2912252-2912509,2912768-2913070
Length = 641
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 130 NNEQPKLDEKYHDNKMNAKDHNNEXGND-VTPQLIDDS 240
+NE PKLDE++ ++D E G+D V P D+
Sbjct: 106 DNENPKLDEQHMQCSTLSEDTQKENGSDGVNPTSFTDA 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,967
Number of Sequences: 37544
Number of extensions: 175347
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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