Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p04
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    29   0.42 
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   0.55 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.3  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   9.0  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.0  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 292 IENRF*TEKVYDYHEDFLSLPGKRYFVEKMQKEECK 399
           +EN+F    VY+Y  D  S  GKR+ +       CK
Sbjct: 570 VENKFCPAGVYEYVNDEASSYGKRFVINSQNCVHCK 605


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = -3

Query: 223 YWFSLIYISSAFAAYIYVLYSMFLTVSTFIIKRR 122
           ++ S +Y +S+F ++IY  Y +F T+ T I+KR+
Sbjct: 155 HFVSFLY-NSSFISHIYGNYDVFSTLYTVILKRK 187


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 223 YWFSLIYISSAFAAYIYVLYSMFLTVSTFII 131
           YWF  I  SS   A +Y  YS+ ++V  F +
Sbjct: 576 YWFFKISSSSLATAVLYFGYSLLISVLVFFL 606


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 260 EKSILKTREHHILLVFSDLYQLGVCRIYLC 171
           EK   ++ E+ +L +F D  + G+C+ ++C
Sbjct: 416 EKFFKESSENKMLNLFEDYNEFGLCKSFIC 445


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 281 RIDSSKIDSRLKKFTITTKISS 346
           RI+  ++ + LKKF I TKI S
Sbjct: 567 RIEEEEVINSLKKFIILTKIKS 588


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 199 SSAFAAYIYVLYSMFLTVSTFIIKRR 122
           S  F+   +  Y+++LT+STF+   R
Sbjct: 499 SQCFSMLSFAKYAIYLTLSTFVCSSR 524


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 120 PLRYVVFVPVSFVIKFIVKN*RYINIKLXL 31
           PL+Y+  VP+ +VI+ +V + R I   L L
Sbjct: 179 PLQYLAHVPIGYVIQRVVFSERPIPQSLFL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,275
Number of Sequences: 5004
Number of extensions: 33885
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)