Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p02
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 0.75
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 1.7
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 4.0
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 4.0
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 24 5.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 7.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 23 9.2
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 23 9.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 23 9.2
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 23 9.2
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 0.75
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 117 LVDFLLVLNRHT**KVLKYFIKYKIDKKL 31
++ F+L+ NRH ++ KY++ + D+K+
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKV 29
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 1.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -2
Query: 255 TNISVFNNNIYNASRARQHSTGPPFAQA 172
+N+ + N N + +SR+++ TGP + A
Sbjct: 334 SNLDIPNENAHESSRSKKKHTGPSLSSA 361
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 320 QNIYLSSHLNKKIEKKIYVRQKLIFPF 240
Q + LNK IEKK ++KL+ PF
Sbjct: 1081 QKFFYQVRLNKGIEKKQEWKEKLLGPF 1107
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 321 SKYLFIKSFE*KN*KENLC*TKTNISVFNNNI 226
+KY + FE KN ENL +N++ NN+
Sbjct: 123 TKYFNSRHFEIKNAVENLPSFSSNLTTIGNNL 154
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 230 IYTMLHGPDNILPGRHLPRPGLSCSIGVC 144
IY P+N++ G P+ ++C +G C
Sbjct: 25 IYNGEGRPENLVVGEKKPKRKVACLVGYC 53
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 237 NNNIYNASRARQHSTGP 187
N N+ NASR R H T P
Sbjct: 172 NYNLRNASRTRSHQTLP 188
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 214 TGQTTFYRAAICPGLV 167
+G TTF+R IC G V
Sbjct: 1085 SGHTTFFRVGICLGKV 1100
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 234 NNIYNASRARQHSTGPPFAQAW 169
N+++NAS R S AQ W
Sbjct: 360 NSVFNASGERSESANVETAQVW 381
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 37 FINFVFYEIFQHFLLSMSIQYKKK 108
FINFVF+ + F S Y +K
Sbjct: 197 FINFVFHSLLAVFFSSKYTSYAQK 220
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 60 NISTLSIKYVDSVQEENQQVQNAKGIQGADAD 155
+I T ++ + ENQ +AK + G+D D
Sbjct: 122 DIETKQWSHIPGMITENQTNDDAKEVNGSDVD 153
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 142 EQTPILQDRPGLGKWRPG 195
+ PIL RPGL + PG
Sbjct: 172 DDIPILLRRPGLSSYTPG 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,710
Number of Sequences: 5004
Number of extensions: 23194
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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