Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17p02
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    29   0.61 
U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    26   5.7  
Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AF100663-4|AAC68982.2|  440|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 206 LAREALYILLLKTEILVFV*HKFSFQFFYSNDLINKY 316
           + ++  ++LL    I+ ++ ++F + F YS + I+KY
Sbjct: 114 ILQQTFHLLLFSLAIMSYLKYQFPYDFLYSQNYISKY 150


>U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical
           protein R05G6.10 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -3

Query: 263 RQKLIFPFLIII----YTMLHGPDNILPGRHL 180
           +QK++ PF +++    + + HG   ILP  HL
Sbjct: 358 QQKIVIPFFVLLLKDLFLIYHGHPRILPNAHL 389


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 52   FYEIFQHFLLSMSIQYKKKINKCKMPKEFKEQT 150
            F+ +F H +LSM++Q  +K     +PK  K+++
Sbjct: 3575 FFSVFYHAMLSMTMQLYEKGYVNTIPKAEKQES 3607


>Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 8   HFLKKHIINFLSILYFMKYFNTFY*VC 88
           H  KK+ INF    Y MKY      +C
Sbjct: 402 HLFKKYCINFNEYEYAMKYVKVINNMC 428


>Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 8   HFLKKHIINFLSILYFMKYFNTFY*VC 88
           H  KK+ INF    Y MKY      +C
Sbjct: 402 HLFKKYCINFNEYEYAMKYVKVINNMC 428


>AF100663-4|AAC68982.2|  440|Caenorhabditis elegans Hypothetical
           protein K08B4.5 protein.
          Length = 440

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 66  KYFIKYKIDKKLI 28
           K FIKY++DKKLI
Sbjct: 379 KDFIKYRVDKKLI 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,950,999
Number of Sequences: 27780
Number of extensions: 129396
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)