Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17p01
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 31 1.1
06_01_0076 - 622789-623689,623714-623931 30 1.5
04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537... 29 2.6
10_08_0892 - 21347588-21348346 29 4.5
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 29 4.5
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 29 4.5
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 28 5.9
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 5.9
05_07_0046 + 27310074-27310229,27310331-27310459,27311331-273114... 28 5.9
11_01_0804 - 7137525-7137824,7138207-7139043 28 7.8
08_02_0306 - 15599409-15599657,15600326-15600475,15600574-156006... 28 7.8
07_01_0225 - 1650665-1652743 28 7.8
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 437 RIVVSYLGA-LYKRNPEPMRMFLSLSIVKVVMQIIYFGYQPHFFDIFGNETYWFL 598
R V+SYLG LYK + + K + ++G+ HF +FG T + L
Sbjct: 224 RSVISYLGMDLYKLVEMELSLMYDFLYTKAAVIHTWYGFCIHFVSLFGTATTFLL 278
>06_01_0076 - 622789-623689,623714-623931
Length = 372
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +2
Query: 236 PWAVVEP---LLLVLNLGTHGFYPFPGTFR 316
PW V+ L+L L++G H Y FPGTF+
Sbjct: 233 PWLVISGDMLLMLDLSVGIHHSYGFPGTFQ 262
>04_04_0547 -
26152892-26153194,26153248-26153329,26153349-26153707,
26154366-26154404,26154998-26155168,26155651-26155725,
26156858-26157055,26157208-26157402
Length = 473
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Frame = -2
Query: 643 NDCNEDNGDEYVKEFQEPVSFITEYIEEMRLVSEIND-------LHHDLYYGEAEEHSHR 485
+DC+ Y ++F V+ + E +EE+R+ E+ND L H ++GE + H
Sbjct: 135 SDCSTAGLSHYHEDFA--VAVVDEVLEEIRVGLELNDYSMQQQRLAHMQFFGELYNYEH- 191
Query: 484 FGISLI*CS-----QIGHDNPQP 431
G S+I + GH P+P
Sbjct: 192 IGSSIIFQTLYLIIVFGHKTPEP 214
>10_08_0892 - 21347588-21348346
Length = 252
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 424 INEKIEDVNQVHVENTGIASGLCDNRC 344
+ ++ ED ENT IA G D+RC
Sbjct: 212 LEDRTEDKGSPETENTSIAGGASDSRC 238
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 12 CVVNCVQ-FFQLETFSQWFYTLLTCAVESNYALYV 113
CV N ++ FFQ+ SQW+Y L C + S + Y+
Sbjct: 1044 CVRNNLRTFFQVLVQSQWWYNLEGCLLHSPHLKYL 1078
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +2
Query: 431 WLRIVVSYLGALYKRNPEPMRMFLSLSIVKVVMQIIYFGY----QPHFFDIFGN----ET 586
W + + ALY F L I KVV ++YFGY FF + G
Sbjct: 586 WRSYLTAGSSALYLFLYAAFYFFTKLDITKVVSGVLYFGYMLIASAAFFVLTGTIGFYAC 645
Query: 587 YWFLKLL 607
+WF +L+
Sbjct: 646 FWFTRLI 652
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +2
Query: 431 WLRIVVSYLGALYKRNPEPMRMFLSLSIVKVVMQIIYFGY----QPHFFDIFGN----ET 586
W + S ALY F L I K+V I+YFGY FF + G
Sbjct: 562 WRSYLTSGSSALYLFLYAAFYFFTKLQITKLVSGILYFGYMLLASLAFFVLTGTIGFCAC 621
Query: 587 YWFLKLL 607
+WF +L+
Sbjct: 622 FWFTRLI 628
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 658 FCVFLNDCNEDNGDEYVKEFQEPVSFITEYIEEMRLVSEIN 536
+C+ + DEY KE QE + F Y+ ++R ++ N
Sbjct: 546 WCIMQSKIKSGAVDEYKKEVQEMLEFAESYMRKVRTSNQDN 586
>05_07_0046 +
27310074-27310229,27310331-27310459,27311331-27311496,
27311577-27311624,27312189-27312274,27312385-27312453,
27312549-27312593,27312697-27312759,27312848-27312924,
27313125-27313140
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = -2
Query: 640 DCNEDNGDEYVKEFQEPVSFITEYIEEMRLVSEINDLHHDLYYGEAEEHSHRFGISLI*C 461
DCN + DEY K +E F EY EMR + + L D+ GE E +
Sbjct: 165 DCNGNFDDEYFKGTEESNQFRREY--EMRKMKQDEGL--DI-IGEGLETLKNMASDM--N 217
Query: 460 SQIGHDNPQPNQINEKIEDVNQVHVENTGI 371
++ P ++++EK++ N ++NT +
Sbjct: 218 EELDRQVPLMDEMDEKVDRAN-TDLKNTNV 246
>11_01_0804 - 7137525-7137824,7138207-7139043
Length = 378
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +2
Query: 44 GNVLTMVLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHLLTVAIVTDGFQCDVNYDK 223
G++L V +T+ G A+ H+ VLD+ ++ A V DG V D
Sbjct: 208 GDLLRGVASLTDCAGGDGATARAIAAAFPHIKCTVLDLP-KVIDKAPVDDGVVNYVAGDM 266
Query: 224 FSAIPWAVVEPLLLVLN 274
F A+P A L LVL+
Sbjct: 267 FHAVPPAQAVLLKLVLH 283
>08_02_0306 -
15599409-15599657,15600326-15600475,15600574-15600663,
15600776-15601126,15601389-15601430,15601523-15601600
Length = 319
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 62 VLHVTNMCCGIKLRTICFVIAYLHLVSCVLDIAFHL-LTVAIVTDGFQCDVNYDKFSAIP 238
++HV + L + C + +L LV C LD HL L+ FQC F
Sbjct: 106 LVHVNRESLEVMLHS-CHNLQWLSLVRCYLDGKLHLVLSHLRYIKIFQCKTTMAAFQDAV 164
Query: 239 WAVVEPLLLVLNLGTH 286
+++ + +V NL H
Sbjct: 165 ATLLKGIPIVRNLTLH 180
>07_01_0225 - 1650665-1652743
Length = 692
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +2
Query: 269 LNLGTHGFYPFPGTFRRQYNMYVE---YTSIIAEPRCYPGILHVYLVDILNFLINLIWLR 439
+N H FYP P FR+ +N V + + A YP + L +++ IN
Sbjct: 81 INRKGHAFYPSPLHFRKSHNNKVHSFAVSFVFAIRSSYPRMSLHGLAFVVSPSINFS-NA 139
Query: 440 IVVSYLGALYKRN 478
+ + YLG L +N
Sbjct: 140 LAIQYLGLLNSKN 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,629
Number of Sequences: 37544
Number of extensions: 438827
Number of successful extensions: 1027
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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