Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o24
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 162 3e-41
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 130 1e-31
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 130 2e-31
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 117 1e-27
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 113 1e-26
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 105 4e-24
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 69 7e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 69 7e-13
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 66 4e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 1e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 61 1e-10
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 61 1e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 56 3e-09
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 54 1e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 52 6e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 50 3e-07
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 47 2e-06
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.52
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.69
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 3.7
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 4.8
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 8.5
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 162 bits (394), Expect = 3e-41
Identities = 70/89 (78%), Positives = 80/89 (89%)
Frame = +1
Query: 298 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 477
CVVVGDGAVGKTCLLISYTTN FP +Y+PTVFDNY+ VM+ +P LGL+DTAGQEDYD
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYD 65
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENVR 564
RLRPLSYPQTDVFL+CFS+ +PASFENV+
Sbjct: 66 RLRPLSYPQTDVFLVCFSVTSPASFENVK 94
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 479 DSAPSLTHRRTSSLYVFRWSTQPHS-KTFGAKWYPXVRHHC 598
D L++ +T V T P S + KW+P V HHC
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHC 105
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 130 bits (315), Expect = 1e-31
Identities = 59/93 (63%), Positives = 72/93 (77%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 480
V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ I L LWDTAGQEDYDR
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDR 69
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENVRGQVVS 579
LRPLSYP + V LICFS+ P S +NV+ + +S
Sbjct: 70 LRPLSYPDSHVVLICFSVDAPESLDNVQEKWIS 102
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 130 bits (314), Expect = 2e-31
Identities = 57/93 (61%), Positives = 73/93 (78%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 480
V+VGDGA GKTCLLI ++ FP Y+PTVF+NY A+V VDG+ + L LWDTAGQEDYDR
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDR 69
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENVRGQVVS 579
LRPLSYP + V LICF++ +P S +NV+ + +S
Sbjct: 70 LRPLSYPDSHVILICFAVDSPDSLDNVQEKWIS 102
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 117 bits (282), Expect = 1e-27
Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQEDY 474
VVVGDG GKTCLLI +++ FP Y+PTVF+NY ++ + K I L LWDTAGQE+Y
Sbjct: 18 VVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEY 77
Query: 475 DRLRPLSYPQTDVFLICFSLVNPASFENV 561
DRLRPLSYP ++V L+CFS+ PAS NV
Sbjct: 78 DRLRPLSYPNSNVILLCFSIDCPASLNNV 106
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 113 bits (273), Expect = 1e-26
Identities = 50/87 (57%), Positives = 65/87 (74%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 480
VVVGDGA GKT LL +T FP EY+PTVF+NY ++ VDGK + L LWDTAGQE+Y+R
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYER 71
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENV 561
LRP+SY + + L+ F++ +P S ENV
Sbjct: 72 LRPMSYAKAHIILVGFAIDSPDSLENV 98
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 105 bits (253), Expect = 4e-24
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 480
V++GDGA GKT LL +T FP Y PT+F+NY ++ VDG I L LWDTAGQE+YD+
Sbjct: 17 VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQ 76
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENV 561
LR LSY T V +ICF++ + S ENV
Sbjct: 77 LRSLSYSDTHVIMICFAVDSRDSLENV 103
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 68.5 bits (160), Expect = 7e-13
Identities = 33/87 (37%), Positives = 51/87 (58%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR 480
VVVGDG VGK+ L I + F EY PT+ D+Y +DG+ L + DTAGQE+Y
Sbjct: 12 VVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEYSA 71
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENV 561
+R + FL+ +++ + +SF+ +
Sbjct: 72 MREQYMRTGEGFLLVYNITSRSSFDEI 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 68.5 bits (160), Expect = 7e-13
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYD 477
V++GD VGKTCL+ + F EY T+ D + +V+VD K + L LWDTAGQE +
Sbjct: 12 VILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQ 71
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENV 561
L Y D +I +++ N SF++V
Sbjct: 72 SLGMAFYRGADCCVIVYNVNNSKSFDSV 99
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 66.1 bits (154), Expect = 4e-12
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYD 477
+++GD VGK+CLL+ ++ ++F +I T+ D + +DGK I L +WDTAGQE +
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 72
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENVR 564
+ Y L+ + + + SF+NVR
Sbjct: 73 TITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYD 477
+++GD VGK+CLL+ + + + YI T+ ++ ++GK + L +WDTAGQE +
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENVR 564
+ Y +I + + + SF NV+
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQDSFNNVK 100
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 60.9 bits (141), Expect = 1e-10
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYD 477
+++G+ VGKT ++ Y F +Y T+ D + V+VD K + L LWDTAGQE +
Sbjct: 12 IILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQ 71
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENV 561
L Y D ++ + + N SFE +
Sbjct: 72 SLGVAFYRGADCCVLVYDVNNSKSFETL 99
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 60.9 bits (141), Expect = 1e-10
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYD 477
V++GD VGK+ LL+ +T N F E T+ ++ N+++D K I +WDTAGQE Y
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENV 561
+ Y LI + + +SF+NV
Sbjct: 74 AITSAYYRGAVGALIVYDITKQSSFDNV 101
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 56.4 bits (130), Expect = 3e-09
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +1
Query: 304 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL 483
V+G +VGK+ L + Y N F Y PT+ + +S N+ G+ + DTAGQ++Y L
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYSIL 70
Query: 484 RPLSYPQTDVFLICFSLVNPASFENVR 564
+++ +S+ + +SFE V+
Sbjct: 71 NSKHSIGIHGYVLVYSITSKSSFEMVK 97
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYD 477
V +G+ +VGKT L+ + + F Y T+ D S + ++ + + L LWDTAGQE +
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFEN 558
L P + V +I + + N SF N
Sbjct: 75 SLIPSYIRDSSVAIIVYDITNHNSFVN 101
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 52.0 bits (119), Expect = 6e-08
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQEDY 474
V++GD AVGK+ L++ + + F T+ + + + + L +WDTAGQE Y
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERY 77
Query: 475 DRLRPLSYPQTDVFLICFSLVNPASFENVRGQV 573
L P+ Y + ++ + + AS E + +
Sbjct: 78 KSLAPMYYRNANCAIVVYDITQAASLEKAKSWI 110
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 49.6 bits (113), Expect = 3e-07
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYD 477
V+VGDG GKT + + T F +YI T+ + + + + I +WDTAGQE
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLG 72
Query: 478 RLRPLSYPQTDVFLICFSLVNPASFENV 561
LR Y Q +I F + + +++NV
Sbjct: 73 GLRDGYYIQGQCGIIMFDVTSRITYKNV 100
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 304 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDR 480
++GD ++GKT L+++Y +F E T+ N+ + + I +WD GQ ++
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 481 LRPLSYPQTDVFLICFSLVNPASFENVR 564
+ P+ L F L ++ +++
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIK 102
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 301 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-----KPINLGLWDTAGQ 465
V+ G GK+CLL + N + + TV ++++ ++ G K I L +WDTAGQ
Sbjct: 13 VLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQ 72
Query: 466 EDYDRLRPLSYPQTDVFLICFSLVNPASFENV 561
E + + Y ++ + + N SFE +
Sbjct: 73 EKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL 104
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.52
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 298 CVVVGDGAVGKTCLL 342
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.69
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +1
Query: 298 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 477
C VVG + GKT LL S+ N P N S + + L G+ D D
Sbjct: 424 CFVVGSKSCGKTALLSSFINNN-TNRLTPNTVVN-SVEFQSTQRYLVL---SEIGETDLD 478
Query: 478 RL-RPLSYPQTDVFLICFSLVNPASF 552
L P S D+ + + NP SF
Sbjct: 479 ILAEPKSLEACDILCLLYDSSNPNSF 504
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 498 VREGAESIVVFLSGCIPEAQVDWLSIYHDIRR 403
V +GA+ F SGC Q W S +DI R
Sbjct: 351 VPDGAKFFAYFASGCTYAGQAVWFSWANDICR 382
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 479 DSAPSLTHRRTSSLYVFRWST--QPHSKTFGAKWYPXVRHHC 598
D A S+T R +Y + P SK F +WYP + C
Sbjct: 954 DGANSVTTPREQMVYRNHVESILAPESKIFNMRWYPLEKRLC 995
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 477 IVVFLSGCIPEAQVDWLSIYHDIRRVIVEYCRYIFAGKSI 358
+V FL+G +P+A + L DI + E C G I
Sbjct: 218 VVPFLNGSLPQADLPPLRTIEDIDNLTREQCLTFIQGYGI 257
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 540 VDQRKTYKEDVRLWVREGAESIVVFLSGCIPEAQVDWLSIYHDIRRVIVE 391
V+ RKT E +R++ EG ++ + E +W Y DI +E
Sbjct: 780 VELRKTTSEHLRIFALEGLRTLCIAKRELTEEEYYEWKEKY-DIAASAIE 828
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,985
Number of Sequences: 5004
Number of extensions: 48186
Number of successful extensions: 157
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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