Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o22
(220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 0.44
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 1.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 1.8
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 24 2.4
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 24 2.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 24 3.1
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 23 4.1
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 23 4.1
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 23 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 23 5.5
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 23 7.2
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 23 7.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 22 9.6
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 22 9.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 22 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 22 9.6
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 22 9.6
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 0.44
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 29 IVFVITTLIVHLSEATTGGGKASKISLNDGNSIPA 133
I F + I + ++ KA I L DG SIPA
Sbjct: 356 IAFYLENSIKEVKTSSNDSSKAEHIVLKDGQSIPA 390
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 104 SLNDGNSIPALGXGTFLGXDEKGQKEVK 187
+L DG+ IP LG GT+ + + VK
Sbjct: 17 TLADGSKIPGLGLGTWRSEPNQTKNAVK 44
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 59 HLSEATTGGGKASKISLNDGNSIPAL 136
H AT +A+K LN+G ++PAL
Sbjct: 887 HYPFATPPSQRANKYPLNNGANVPAL 912
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 62 LSEATTGGGKASKISLNDGNSIPA 133
L + + GG S I LN+GN I A
Sbjct: 303 LLDGSVGGDPESDILLNEGNDIEA 326
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 86 HHQWSLPTDEQLKLL*QTRCTSLYKD 9
HH W+LP + K++ +T + L ++
Sbjct: 873 HHSWTLPYRDYFKIVTKTSISHLRRE 898
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 99 FEALPPPVVASDR*TIKVVITNTMHLIVQ 13
F LP ++A R + +N MHLIV+
Sbjct: 271 FSLLPSTIIAGARAFYYLAPSNQMHLIVE 299
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 110 SARSLKLYHHQWSLPTDEQLKLL*QTRCTSL-YKDTD 3
S L+L W +PT+ +K + + C+S+ YK++D
Sbjct: 281 STHFLRLIEFYWGVPTNLIIKRV-EVVCSSISYKESD 316
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 83 GGKASKISLNDGNSIPAL-GXGTFL 154
GG+ K S ND + IP L GTF+
Sbjct: 319 GGRRGKSSSNDNHRIPQLHPDGTFV 343
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -2
Query: 156 PRK---VPXPKAGIELPSFSEIFEALPPP 79
PRK VP P+ E S + E LPPP
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPP 129
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 138 VXAPSSGSTRKDRKKLSQGTRRSRLN 215
V APSS + +++SQG+ + +N
Sbjct: 143 VAAPSSQPAKDQSQQISQGSHKRTIN 168
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/51 (27%), Positives = 17/51 (33%)
Frame = +2
Query: 14 CTMRCIVFVITTLIVHLSEATTGGGKASKISLNDGNSIPALGXGTFLGXDE 166
C C V + VHL A G I+ N N + T L E
Sbjct: 107 CKCNCAVKLENESTVHLQNAAREDGTDEDINSNSVNDVSLSSGETMLQFPE 157
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 122 SYHRSARSLKLYHHQWSLPT 63
++H S LKL H W + T
Sbjct: 192 NFHMSTEELKLTGHGWDVKT 211
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 161 DEKGQKEVKPGDSEKPVK 214
DE+ +E + DSEKPV+
Sbjct: 94 DEQSVEEEEEEDSEKPVR 111
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 117 VTLSRLWVXAPSSGSTRKDRK 179
+++SRL + SSG+T+K +K
Sbjct: 1001 ISVSRLKMVFGSSGNTKKSKK 1021
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 22.2 bits (45), Expect = 9.6
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Frame = -2
Query: 189 GLTSFCPFSSXPRKVPXPKAGIELPSFS---------EIFEALPPPVVASDR 61
G + P SS P P + +LP S +I +A+PPP R
Sbjct: 1930 GKETAVPLSSMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKAR 1981
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 171 PFSSXPRKVPXPKAGIELPSFSEIFEALPPPVVA 70
P S VP P + +P S + PPPV A
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPA 1068
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 104 SLNDGNSIPALGXGTF-LGXDE 166
+L +G+ IP++G GT+ G DE
Sbjct: 16 TLPNGDKIPSIGLGTWRSGKDE 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,429
Number of Sequences: 5004
Number of extensions: 13799
Number of successful extensions: 40
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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