Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o22
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     29   0.38 
03_02_0227 + 6576333-6577769                                           28   0.89 
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425           27   2.1  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     26   3.6  
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383...    26   4.7  
04_01_0279 + 3743025-3745169                                           26   4.7  
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    26   4.7  
06_03_1146 - 28004896-28005554,28005664-28005844                       25   6.3  
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668...    25   8.3  
01_06_0687 - 31249036-31249341                                         25   8.3  

>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  NEVHRVCYNNFNCSSVGSDHWWW*SFKDLAERW 117
           N+++R CYN    S      WWW    D+++ W
Sbjct: 96  NDINRWCYNATTRSMDAESTWWW----DVSDSW 124


>03_02_0227 + 6576333-6577769
          Length = 478

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 65  SEATTGGGKASKISLNDGNSIPALGXGTFLGXDEKGQKEVKPGDSEKPVKW 217
           S+  +GGGK+   +LND  S   +G   F G        +  G   K   W
Sbjct: 154 SQLASGGGKSDFTALNDATSFEFIGEAYF-GVRPSASSSLGTGGPTKAALW 203


>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
          Length = 370

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 49  FNCSSVGSDHWWW 87
           F+  ++GS HWWW
Sbjct: 89  FSPPAIGSPHWWW 101


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 13  LYNEVHRVCYNNFNCSSVGSDHWWW 87
           +Y+ ++  CYN    +  G  +WW+
Sbjct: 68  IYSAINPWCYNGSTSAMNGQSNWWY 92


>04_01_0289 +
           3830052-3831134,3831141-3831230,3831494-3831525,
           3833690-3834623
          Length = 712

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 TMVT-LSRLWVXAPSSGSTRKDRKKLSQGTRRSRLNG 218
           +MVT L +L V  P+S S   +RKKL+   R +  NG
Sbjct: 221 SMVTKLFQLHVDDPTSASRTPERKKLAAMLRDNAYNG 257


>04_01_0279 + 3743025-3745169
          Length = 714

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 TMVT-LSRLWVXAPSSGSTRKDRKKLSQGTRRSRLNG 218
           +MVT L +L V  P+S S   +RKKL+   R +  NG
Sbjct: 574 SMVTRLFQLHVDDPTSASRTPERKKLAAMLRDNAYNG 610


>03_01_0265 +
           2046918-2049102,2052385-2052452,2052542-2052652,
           2053164-2053250,2053476-2053684,2054115-2054340,
           2054473-2054510,2054657-2054714,2055363-2055662,
           2055832-2055903,2055988-2056112,2056240-2056312,
           2056417-2056521
          Length = 1218

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 91  FTTTSGRFRQMNN*SCYNKHD 29
           F +TS    + N+  CYNKHD
Sbjct: 860 FDSTSASVTKYNSGICYNKHD 880


>06_03_1146 - 28004896-28005554,28005664-28005844
          Length = 279

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 201 SESPGLTSFCPFSSXPRKVPXPKAGIELPSFSEIFEALPPPVVASD 64
           S SP   +  P +S P   P P A    PS +    A PPP   +D
Sbjct: 190 SVSPMAPAPAPTTSTPSSPPAPAAMAPSPSTTPGGVAQPPPPPGTD 235


>03_05_1050 -
           29966031-29966076,29966180-29966232,29966420-29966845,
           29966983-29967060,29967135-29967220,29969054-29969155,
           29969221-29969427,29970528-29970885,29971011-29971174,
           29971258-29971366,29971595-29971600
          Length = 544

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +2

Query: 65  SEATTGGGKASKISLNDGNSIPALGXGTFLGXDEKGQKEVKPGDSEKP 208
           S    GGG A   SLN G +I  L      G    G +   PG S  P
Sbjct: 103 SRVNVGGGPAFSSSLNIGGTIQGLSSNLGAG----GNRNSVPGMSVSP 146


>01_06_0687 - 31249036-31249341
          Length = 101

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 143 GTFLGXDEKGQKEVKPGDSEKPVKW 217
           GT  G D++G +  KP  +   V W
Sbjct: 25  GTLAGVDKRGARMTKPSATSSGVAW 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,988,413
Number of Sequences: 37544
Number of extensions: 101454
Number of successful extensions: 319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)