Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o16
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268 33 0.18
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 31 0.74
01_06_0513 - 29944888-29945943 30 1.7
12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847 29 3.0
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813... 29 3.0
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 4.0
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 4.0
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 4.0
02_01_0642 - 4803464-4805665,4806231-4806320 29 4.0
01_05_0645 - 23899579-23904483 29 4.0
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826... 28 5.2
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 28 6.9
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 27 9.2
>06_03_0072 - 16223152-16223987,16224394-16224981,16225941-16226268
Length = 583
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 196 RYKSVFSSKEFLWTLGIYVNSYAWPPPWSEAGIRTGCRF 312
+Y F + L T + VNS WPPPWS+ IR +F
Sbjct: 274 KYSVQFLGHDMLATNALDVNS--WPPPWSDGVIREAKKF 310
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 31.1 bits (67), Expect = 0.74
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Frame = +3
Query: 99 QNSKYTLHGQLNNYK*LCNLETPFPKHNLKMSSIQERLQLKRVPLDTWNIREQLCLASAV 278
+ +K+ + LN Y+ L P+P ++S+ E+ Q K L+T N + +L L
Sbjct: 80 KRAKFGENAFLNIYQKLYEAPDPYPA----LASMAEQDQ-KLSELETENRKMKLELEE-- 132
Query: 279 VRSGDQNWMSVSRALKTLGEPNRPPDWYSQKSCAAQYGTLLEHVETPKRK-KRNSDGGVE 455
R+ + + ++ L E NR + ++ + E VE +R +S +E
Sbjct: 133 YRAEAAHLKNQQATIRRLEERNRQLEQQMEEK-------VREMVEMKQRSLAEDSQKTLE 185
Query: 456 TPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLELWANM 623
++ +R QD++ + +++ M + HE + +L E+R S D E N+
Sbjct: 186 ALKDR--ERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNL 239
>01_06_0513 - 29944888-29945943
Length = 351
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 300 WMSVSRALKTLGEPNRPPDWYSQKSCAAQYGTLLEHVETPKRKKR 434
W+ VSR +RPP +YS++ C + TL + K + R
Sbjct: 128 WLEVSRLAAAAA--SRPPGYYSEQQCRNRIDTLRKKYRKEKERMR 170
>12_02_0790 - 23168952-23169456,23170338-23170467,23170580-23170847
Length = 300
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 207 RLQLKRVPLDTWNIREQLCLASAVVRSGDQNWMSVSRA--LKTLGEPNR 347
+L+L+R P W + E L L + + G+ W S++RA LK G+ R
Sbjct: 54 QLELRRGP---WTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCR 99
>06_03_0177 -
17579474-17580109,17580549-17580626,17581160-17581309,
17581415-17581538,17583227-17583315,17583431-17583507,
17584413-17584822,17586203-17586216
Length = 525
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 383 TIWNAIRTCGNAETKKEKL*RWRGNSTGEYIET 481
++W+A+ T E +K+K+ W+ S GEY+ T
Sbjct: 102 SVWSAVHTVQLVEQEKDKI-VWKFTSHGEYMTT 133
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 399 LEHVETPKRK-KRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIR 575
L V+T K K K++ + + KRL + + Q ++ + + ++MK +L EIR
Sbjct: 918 LSRVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKIMKQDLEEIR 977
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 231 LDTWNIREQLCLASAVVRSGDQNWMSVSRAL--KTLGEPNR 347
LDT I Q+ L+ + RSG +NW+++SR + + G P R
Sbjct: 536 LDT-TIANQISLSEELRRSGLENWLNLSRLMFHQVAGSPIR 575
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 393 TLLEHVETPKR----KKRNSDGGV-ETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKD 557
+L++H ++ K+ K DG + E Q+S + + R+ E++ + E S +HE D
Sbjct: 361 SLVQHRDSLKQALAEKTAQLDGCMTELQQKSDAMQAAESRVEELKILLDEKSNEHEQCLD 420
Query: 558 ELSEIRN 578
EL E N
Sbjct: 421 ELRETYN 427
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 486 TQDRIAEIQKNIAEMSQQHEVMKDELSEIRNPSTSDERLLELWAN 620
TQ R+AE+ + E+ Q + +D+L ++R E+ ++ N
Sbjct: 493 TQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQTLQN 537
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 399 LEHVETPKRK-KRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIR 575
L V+T K K K++ + + KRL + + Q ++ + + ++MK +L EIR
Sbjct: 838 LSRVKTDKDKLKKDIQKSKFLSIDEVFKRLDEQKKKNEQPDLISLFEDQKIMKQDLEEIR 897
>03_02_0415 -
8263459-8263611,8263788-8263919,8264841-8264936,
8265021-8265137,8265352-8265435,8265517-8265577,
8266217-8266266,8266544-8266633,8267539-8267757,
8269207-8269262,8269469-8269546,8269707-8269811,
8269925-8270069,8270310-8270388,8270470-8270537,
8271550-8271626,8272676-8272712,8273107-8273232,
8273770-8273805
Length = 602
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 393 TLLEHVETPKRKKRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEI 572
TL+E +E K + S E + SIL+ + R E+ K + ++ E ++D+L +
Sbjct: 390 TLIEKLENSKTDLQ-SKITKEAKENSILQASLERRKVELHKRRLALEKEVENLRDQLQKE 448
Query: 573 RNPSTSDE 596
RN S E
Sbjct: 449 RNLRVSLE 456
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 528 FQQYSSGSRLSDLGLNVSIYSPVEFPRHRQSFSFFVSAFPHVLIAF 391
FQ RL GL++S PV RH + F SA+P+ +F
Sbjct: 377 FQFKVEYQRLGYTGLSLSKQIPVRPYRHNEYERFITSAYPYYAASF 422
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 399 LEHVETPKRK-KRNSDGGVETPQESILKRLTQDRIAEIQKNIAEMSQQHEVMKDELSEIR 575
L V+T K K K++ + + KRL + + + ++ + + ++MK +L EIR
Sbjct: 633 LSRVKTDKDKLKKDIQKSKFLSIDEVFKRLNEQKKKNEKPDLISLFEDQKIMKQDLEEIR 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,963
Number of Sequences: 37544
Number of extensions: 375861
Number of successful extensions: 1006
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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