Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o10
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   3.0  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    27   3.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.0  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 290 WATFTNVCSSICLRID--LKKKWLSFLGNFNCSGDLVTRGGYRV 165
           + +F N     C   D  +  K L  LG FNCS D++    Y +
Sbjct: 52  YQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADILPGDKYEI 95


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 224 SFLGNF-NCSGDLVTRGGYRVALPQAQSN*LRYW*NGATLAARNRAGYDFCSLTHIIKKY 48
           SFL  F +C G  V   G+R+AL Q +            ++   RA  +FC  + ++  +
Sbjct: 57  SFLSGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLHFF 116

Query: 47  QSNY 36
             N+
Sbjct: 117 AVNF 120


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 90  GAIACCECGSILPI 131
           GA  CC CG ILP+
Sbjct: 483 GANWCCHCGYILPL 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,655
Number of Sequences: 5004
Number of extensions: 43569
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)