Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o09
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    40   2e-05
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                29   0.035
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.25 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.25 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.25 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.25 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
 Frame = +2

Query: 266 ICKLGEGSYGSVYKA-LHKESGQVLAIKQVP----VDTDLQE-IIKEISIMQQCDSPYVV 427
           +  LG G +G V    +  +S +  A+KQ+     V+T  Q+ I+ E  IM + D  +VV
Sbjct: 370 LATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVV 429

Query: 428 KYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHRR 598
           K + ++     L+++ME C  G +  ++R  K    +          ++  +YLH R
Sbjct: 430 KLFKTFKDRKYLYMLMEACLGGELWTVLR-DKGHFDDGTTRFYTACVVEAFDYLHSR 485


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 29/106 (27%), Positives = 45/106 (42%)
 Frame = +2

Query: 275 LGEGSYGSVYKALHKESGQVLAIKQVPVDTDLQEIIKEISIMQQCDSPYVVKYYGSYFKN 454
           LG G +G VYKAL+K       I Q    +++    K  S ++  +   +VK        
Sbjct: 73  LGSGGFGIVYKALYKGEQVAAKIIQTEKYSNMLNSEKHASFLKHSN---IVKVLMIEQGA 129

Query: 455 TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 592
           +   I ME CG    +   RL +  L ++E   IL      L++ H
Sbjct: 130 SLSLITMELCGTTLQN---RLDEAILIKNERICILKSITCALQFCH 172


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 464 WIVMEYC--GAGSVSDIMRLRKKTLSEDEIATILC 562
           W+ +  C  G G +S ++ L   +L+   I TILC
Sbjct: 3   WVALGRCAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 464 WIVMEYC--GAGSVSDIMRLRKKTLSEDEIATILC 562
           W+ +  C  G G +S ++ L   +L+   I TILC
Sbjct: 3   WVALGRCAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 464 WIVMEYC--GAGSVSDIMRLRKKTLSEDEIATILC 562
           W+ +  C  G G +S ++ L   +L+   I TILC
Sbjct: 3   WVALGRCAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 464 WIVMEYC--GAGSVSDIMRLRKKTLSEDEIATILC 562
           W+ +  C  G G +S ++ L   +L+   I TILC
Sbjct: 3   WVALGRCAGGGGRLSSVLSLSLTSLASSLIFTILC 37


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 218 TSLIHFLMRFPSFLLITFN 162
           +++I  L+RF SF L+ FN
Sbjct: 132 STIIFLLIRFKSFSLLNFN 150


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 102 FISFSLLYNVHYLYIKHFV 158
           F+ F+L+Y + YL+I   V
Sbjct: 416 FVCFNLMYWIIYLHISDVV 434


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 102 FISFSLLYNVHYLYIKHFV 158
           F+ F+L+Y + YL+I   V
Sbjct: 416 FVCFNLMYWIIYLHISDVV 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,486
Number of Sequences: 438
Number of extensions: 3174
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)