Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o08
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    40   3e-04
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   2.7  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.5  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   3.5  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   3.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    25   8.1  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 49/110 (44%)
 Frame = +1

Query: 253 LLPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPEEEVTL 432
           LLP +V P  YD+ L  D++    F+Y G+V + L++L+ ++ I LH     I    +  
Sbjct: 19  LLPKNVKPIHYDLSLYPDLE---TFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALE- 74

Query: 433 TGPKEVAVDNVKLNDTFNLLTLSLSQQLDEGDNYVLRIPFYGNLQQDLDG 582
            G + V    V   D    + L     +      VL +PF   +   ++G
Sbjct: 75  WGSQTVWASEVSYGD--ERIVLQFPSTVPANSVAVLTLPFTARISSGMEG 122


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +1

Query: 67   NKLQNTFNRRFIEL*-VIHFEMCSESWESK*LDFVFVCSRYCTMACLHFILLLSCALLST 243
            NK+   F  RFI+   +I FEM  +    K  D      +   +   H  L     L  +
Sbjct: 806  NKVLVLFRPRFIDQDSIIEFEMLLDR-RIKYDDLCIELGQKLGIGADHIRLTTCNPLTYS 864

Query: 244  GEYLLPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNIL 366
               ++P D   T Y++L   + +  +N  ++  +D+ L+ L
Sbjct: 865  AGMVVPNDSNITLYEILYSSEEEMPSNVIFYETMDVSLSDL 905


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 157 LDFVFVCSRYCTMACLHFILLLSCALLSTGEYLLPG 264
           L+   +CS     A L FILLL C  + T +++L G
Sbjct: 234 LNKALICSTCSISAALFFILLLVCIPIWTLKHMLFG 269


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 255 AARRCGADILRRAPHLRRGSGDELQLLRPCR 347
           A RR    ++R A H R  S DE+++L+  R
Sbjct: 103 AKRRVALKVVRSAEHYRETSIDEIRILQKIR 133


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 157 LDFVFVCSRYCTMACLHFILLLSCALLSTGEYLLPG 264
           L+   +CS     A L FILLL C  + T +++L G
Sbjct: 224 LNKALICSTCSISAALFFILLLVCIPIWTLKHMLFG 259


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 281 STTCSSFTTWIRRRTSATSAVSTLN*TSSNRPQRSCS 391
           S + SSF++ +   +S +S+  T + +SS+RP  S S
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 160 DFVFVCSRYCTMACLHFILLLSCALLSTGEYLLPGDVVPTFYDVLLI 300
           D V VC++Y ++ CL ++L +S   L+     + GD  P  + V+ I
Sbjct: 49  DCVHVCTKYGSLECLDWLLDISGVNLN-NRCRMTGD-TPLHFAVMFI 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,588
Number of Sequences: 5004
Number of extensions: 51941
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)