Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o08
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 37 0.014
04_04_1538 + 34239913-34241274,34241468-34241578 33 0.22
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 32 0.39
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 29 2.1
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 29 3.6
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695... 28 4.8
04_01_0319 - 4291144-4293402 28 4.8
08_02_1593 + 28105567-28105830,28106075-28106164,28106435-28106524 27 8.3
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 36.7 bits (81), Expect = 0.014
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = +1
Query: 244 GEYLLPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPEEE 423
G+ LPG P YD+ L+ D+D ++ G VD+ +++ PT +VL+A +
Sbjct: 13 GQARLPGFAAPRRYDLRLVPDLD---GCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGG 69
Query: 424 VTLT---GPKEVAVDNVKLNDTFNLLTLSLSQQLDEGDNYVLRIPFYGNLQQDLDG 582
V +E+ V +L + ++ L G+ L I F G L + G
Sbjct: 70 VQFKPHGAEQELHPAEVTNVPEDEILIIRFNEVLPVGEG-TLVIAFKGTLNDKMHG 124
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +2
Query: 203 CILFYCCPVR---CCPRANTCCPAMW--CR-HSTTCS 295
CI++ CCPV CC +TCCP + C + TCS
Sbjct: 417 CIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCS 453
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -1
Query: 339 AEVAEVRRRIHVVNEEHVVECRHHIAGQQVFARGQ---QRTGQQ*NKMQARHCTISTAYK 169
+E+ +++H + +++ E + A ++ FAR + Q T ++ NK+++RH T A
Sbjct: 1519 SEMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKA-- 1576
Query: 168 HEVQLFRLPRF 136
HE +L RF
Sbjct: 1577 HEEKLAESIRF 1587
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 251 YSPVDSSAQDNNKIKCKHAIVQYLLHTNTKSS 156
Y V+S+A +KC+HA ++ +HT +SS
Sbjct: 26 YRVVNSAANRRYTVKCEHARCKWKVHTTKRSS 57
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = +1
Query: 217 LLSCALLSTGEYLLPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHA 396
LL+ L+ +Y D + T + L D + G D+K ++ +K + +
Sbjct: 190 LLNLMLIHYSKYYGQSDTLKTTFSHLAWVQTDRKSG----GLGDLKYPLISDVTKSISKS 245
Query: 397 QGFSIPEEEVTLTGPKEVAVDNVKLNDTFNLLTLSLSQQLDE 522
G IP++ + L G + + V + T N L++ + +DE
Sbjct: 246 FGVLIPDQGIALRGLFIIDKEGVIQHSTIN--NLAIGRSVDE 285
>11_04_0274 -
15667178-15667444,15668352-15668678,15669430-15669563,
15669669-15669726,15669842-15669961,15670814-15670876,
15671388-15671539,15673002-15673116,15673907-15673981,
15674474-15674538,15675020-15675128
Length = 494
Score = 28.3 bits (60), Expect = 4.8
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +1
Query: 223 SCALLSTGEYLLPGDVVPTFYDVLLIYDVDPATNFSY-FGRVDIKLNILKPTSKIVLHAQ 399
+CAL S G L PG+ + TFY I P F + G V L PT +
Sbjct: 394 NCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGL-ATSPTGDVSARRM 452
Query: 400 GFSIPEEEVTLTGPKEVAVDNVKLNDTFNLLTLSLSQQLDEGD 528
+P EV+ DNV + +T S SQQ+ G+
Sbjct: 453 LAPVPAH-------SEVSPDNV--SGRSRRITHSDSQQIPSGE 486
>04_01_0319 - 4291144-4293402
Length = 752
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 269 WCRHSTTCSSFTTWIRRRTSA 331
W RH C S TW+RR+ ++
Sbjct: 362 WIRHEVLCRSRWTWLRRQVAS 382
>08_02_1593 + 28105567-28105830,28106075-28106164,28106435-28106524
Length = 147
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -3
Query: 295 GARRR---MSAPHRRAAGIRPWTAAHRTTIK 212
GARRR + P RR G+R W +A TIK
Sbjct: 27 GARRRGEGATPPRRRPYGLRRWWSAVAATIK 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,194
Number of Sequences: 37544
Number of extensions: 374227
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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