Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o08
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)            52   3e-07
SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)          42   4e-04
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                41   6e-04
SB_46834| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 32   0.30 
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              30   1.2  
SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)                      30   1.2  
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 29   2.1  
SB_32087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               29   2.1  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               28   4.9  
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    28   4.9  
SB_50598| Best HMM Match : Peptidase_M10_N (HMM E-Value=2.9e-08)       28   4.9  
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        28   4.9  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
          Length = 302

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/109 (29%), Positives = 53/109 (48%)
 Frame = +1

Query: 256 LPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPEEEVTLT 435
           LP DVVPT Y  L ++ V  +  F + G+  I + ++K T  IVLH++   I    +   
Sbjct: 92  LPKDVVPTKY-TLTMHPV-LSGKFDFTGKAAIDIKVVKNTKYIVLHSKKLKIKSYRLVND 149

Query: 436 GPKEVAVDNVKLNDTFNLLTLSLSQQLDEGDNYVLRIPFYGNLQQDLDG 582
             + V +  + LN+    L L   Q L +G  + +++ F G L   + G
Sbjct: 150 KKENVKIARMLLNEKLEQLLLEPKQGLVKGQKFTIKLEFSGELSNKMAG 198


>SB_13904| Best HMM Match : Peptidase_M1 (HMM E-Value=3.7e-08)
          Length = 326

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
 Frame = +1

Query: 256 LPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPEEE---V 426
           LPGDV+PT Y++ L   VD      + GRV++  N+ + TS ++LH+    I +     +
Sbjct: 34  LPGDVIPTHYNINLNITVDQP---HFHGRVNMFANVTRATSVLLLHSSKEMIFKRSAVWM 90

Query: 427 TLTGPKEVAVDNVKLNDTFNLLTLSLSQQLDEG 525
             + P+E  + N    D      L ++  L EG
Sbjct: 91  VASTPEERQIKNSFYFDKNEYYVLEMADTLKEG 123


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
 Frame = +1

Query: 256 LPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPE---EEV 426
           LP +V+P  YD+ L  ++   T  ++ G V+I +++L+ T  I++H  G ++ +    E 
Sbjct: 95  LPTNVIPVHYDLFLHPNL---TTGTFEGEVEILVDVLQETEYILVHTNGMTVSKSSVHEA 151

Query: 427 TLTGPKE-VAVDNV-KLNDTFNLLTLSLSQQLDEGDNYVLRIPFYGNLQQDLDG 582
           T    KE +AV  + +  + F  + + +S++L  G  Y++R+ +      +L+G
Sbjct: 152 TKESQKEPLAVKEMFEYKENFYYVFI-MSEKLSVG-RYIVRMDYRAPFSSELNG 203


>SB_46834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 245 ANTCCPAMWCRHSTTCSSFTTWIRRRTSATSAVSTLN*TSSNRPQRSCSTRKASA 409
           +NT  P +WC H +  S+ T      T+AT+A+ T   T+ +R   +   R  S+
Sbjct: 3   SNTATPTLWCDHGSRHSNRTPTAAATTTATTAIYTATTTAESRSNNTSDNRATSS 57


>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 17/57 (29%), Positives = 34/57 (59%)
 Frame = +1

Query: 256 LPGDVVPTFYDVLLIYDVDPATNFSYFGRVDIKLNILKPTSKIVLHAQGFSIPEEEV 426
           LP +V+P  YD+ L  ++   T  ++ G V+I +++L+ T  I++H  G ++ +  V
Sbjct: 70  LPTNVIPVHYDLFLHPNL---TTGTFEGEVEILVDVLQETEYILVHTNGMTVSKSSV 123


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/84 (23%), Positives = 39/84 (46%)
 Frame = +1

Query: 331 YFGRVDIKLNILKPTSKIVLHAQGFSIPEEEVTLTGPKEVAVDNVKLNDTFNLLTLSLSQ 510
           + G+VDI +N+ K T  I++H +  ++ + ++  TG +             N   +  ++
Sbjct: 127 FHGKVDIYINVFKATKIIIVHNRRLNVSDIDIRKTGSQGSLGIRQHFPFKKNQFYVMEAE 186

Query: 511 QLDEGDNYVLRIPFYGNLQQDLDG 582
           Q  E   YV+ I + G   + L G
Sbjct: 187 QSLEPSLYVVSISYKGFYSKGLRG 210


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 212 FYCCPVRCCPRANTCCPAMWCRHSTTCSSFTTWIRRRTSATSAVSTLN*TSSN 370
           +YCC   CC      C A     +TT ++ TT     T+ T+  +T   T++N
Sbjct: 512 YYCCYYCCC-----SCTATTATATTTATATTTATTAATATTTTTTTTTNTTTN 559


>SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)
          Length = 325

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 281 STTCSSFTTWIRRRTSATSAVSTLN*TSSNRPQRSCSTRK 400
           STT +S TT   + T A     T+  T++NRPQ S  T K
Sbjct: 157 STTVASTTTETPKTTKAPKTPITIPKTTTNRPQTSTITAK 196


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +2

Query: 35  DVCIHSELSK*INCKILLIVGSLNFKLFILRCVPNLGSRNNWTSCLYAVDIVQWRACILF 214
           + C H +L K INC    I+   N+  F   C   L S  + T C+Y + +V + A I  
Sbjct: 278 NACFHEQLKKQINCNTDHIIHE-NYSRF--TCYNVLSSYFSVTLCIYYILLV-FCAVIFV 333

Query: 215 YCC 223
           Y C
Sbjct: 334 YNC 336


>SB_32087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 444 LGPCQGHFLFRYAEALRVEHDL 379
           LGPC  H  F YA+A RV  +L
Sbjct: 9   LGPCADHRQFHYADAARVRKEL 30


>SB_13393| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 163

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 203 CILFYCCPVRCCPRANTCCPAMWCRHSTTCSSFT 304
           C L  CC +  C     CC    CR  T C + T
Sbjct: 60  CDLTLCCDMSLCCDLLLCCDLTLCRDLTLCYNLT 93



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 203 CILFYCCPVRCCPRANTCCPAMWCRHSTTCSSFT 304
           C L  CC +  C     CC    CR  T C + T
Sbjct: 120 CDLTLCCDMSLCCDLLLCCDLTLCRDLTLCYNLT 153



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 203 CILFYCCPVRCCPRANTCCPAMWCRHSTTCSSFT 304
           C L  CC +  C   + CC  + C   T C   T
Sbjct: 54  CDLTLCCDLTLCCDMSLCCDLLLCCDLTLCRDLT 87



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 203 CILFYCCPVRCCPRANTCCPAMWCRHSTTCSSFT 304
           C L  CC +  C   + CC  + C   T C   T
Sbjct: 114 CDLTSCCDLTLCCDMSLCCDLLLCCDLTLCRDLT 147


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 251 TCCPAMWCRHSTTCSSFTTWIRRRTSATSAVSTLN*TSSNRPQRSCSTRKASAY 412
           TC  +  C  S TC++  T     TS TS  ST + TS+     + S    ++Y
Sbjct: 141 TCTTSYTCTTSYTCTTSYTSTTSYTSTTSYTSTTSYTSTTSYTTTTSYTTTTSY 194


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 221  CPVRCCPRANTCCPAMWCRHS 283
            CP++CCP     CP     HS
Sbjct: 1505 CPIKCCPATAIKCPVGCSEHS 1525



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 221  CPVRCCPRANTCCPA 265
            CP++CC + ++ CPA
Sbjct: 1565 CPIKCCTKLSSSCPA 1579


>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 684

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 291 APHLRRGSG-DELQLLRPCRH*IKHPQTDLKDRAPRARLQHTGRGSDPDRAQG 446
           AP   RG   D    ++  +     PQT + D A   RL HT R   PD++QG
Sbjct: 37  APSYERGGNHDFTSAIKQMQRFAHIPQTGVVDAAT-FRLMHTPRCGMPDKSQG 88



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 291 APHLRRGSG-DELQLLRPCRH*IKHPQTDLKDRAPRARLQHTGRGSDPDRAQG 446
           AP   RG   D    ++  +     PQT + D A   RL HT R   PD++QG
Sbjct: 261 APSYERGGNHDFTSAIKQMQRFAHIPQTGVVDAAT-FRLMHTPRCGMPDKSQG 312


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 233 CCPRANTCCPAMWCRHSTTCSSFTTWIRRRTSATSAVSTLN*TSSNRPQRSCSTRKAS 406
           C  +A     A   + STT ++ TT   RRT++T  +S  + ++S  PQ S     +S
Sbjct: 262 CIRKARKTTLAAGIQTSTTRTTKTTTTMRRTASTLPLSNQSSSTSTTPQPSSPATPSS 319


>SB_50598| Best HMM Match : Peptidase_M10_N (HMM E-Value=2.9e-08)
          Length = 115

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 291 APHLRRGSG-DELQLLRPCRH*IKHPQTDLKDRAPRARLQHTGRGSDPDRAQG 446
           AP   RG   D    ++  +     PQT + D A   RL HT R   PD++QG
Sbjct: 57  APSYERGGNHDFTSAIKQMQRFAHIPQTGVVDAAT-FRLMHTPRCGMPDKSQG 108


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +2

Query: 212 FYCCPVRCCPRANTCCPAMWCRHSTTCSSFTTWIRRRTSATSAVST 349
           + C     C  + T   +  C  S TC++  TWI   T  TS   T
Sbjct: 98  YTCTTSYTCTTSYTSTTSYTCTTSYTCTTSYTWITSYTCTTSYTCT 143


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 170  LYAVDIVQWRACILFYCCPVRCC 238
            +Y    V W +C+  YCC  RCC
Sbjct: 1138 IYMCLAVIWMSCVT-YCCQGRCC 1159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,316,238
Number of Sequences: 59808
Number of extensions: 436403
Number of successful extensions: 1171
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)