Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o06
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    29   0.12 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   0.47 
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   1.4  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   2.5  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   3.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   5.8  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    24   5.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   7.7  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    23   7.7  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   7.7  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   7.7  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    23   7.7  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 189 PLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSS 73
           P+ TV   L+H+ ++  QY+ PSE     KTP    +SS
Sbjct: 384 PMETVSQLLSHYTETISQYLPPSETSPIPKTPNFKFISS 422


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = +3

Query: 30  YCVSCCFFSWL-----KRWLTTAAHVWVFWRPS---VAPMAKRIGVKTARNVST 167
           YC++  FF+WL     +  L  +   W+FW  S   + P  ++  +K +  VST
Sbjct: 40  YCLTTLFFTWLIILYPRPTLACSVAAWLFWFTSLDTLEPDDRKNTLKASEAVST 93


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 62  ETLADDSCPCLGVLAPVCGSD----GKTYWSEDCAKCVNPN 172
           ET ++ +C C+     V  +     G   W  DC KCVN N
Sbjct: 15  ETPSERTCFCIKCWESVPSTSQVWFGGKCWHSDCFKCVNCN 55


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 92  LGVLAP--VCGSDGKTYWSEDCAKCVNPNLTVRRGF 193
           LGV+ P  +  S G T W      CV+ N+ +R G+
Sbjct: 19  LGVVFPAAILLSTGYTVWVFIALICVDSNIKIRNGY 54


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 129 LPSEPQTGAKTPKHGQLSSANVSAKKKNNRKHSIT 25
           LP+EP       K   LS   VS   KN+  +S T
Sbjct: 141 LPNEPVPETNCHKESPLSDETVSETSKNDTSNSPT 175


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 140 SNTFCHRSHRRAPKHPNMGSCRQP 69
           S+    R+HRRA       SCR+P
Sbjct: 280 SSPLITRTHRRAQSETLFSSCREP 303


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 93  WVFWRPSVAPMAKRI 137
           W +W PSV P  K +
Sbjct: 95  WTWWHPSVVPKLKAL 109


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 101 KHPNMGSCRQPTFQPRKKT 45
           K P  G+  QPT +PRK++
Sbjct: 6   KRPGPGNSSQPTERPRKES 24


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 116 GSDGKTYWSEDCAKCVNPNLTVRRGFCPRLDVVFQK 223
           GS+ + Y S+   +  NP+  +++    RL+V F+K
Sbjct: 857 GSESEVYASKIPGELCNPSKRLKQLHWKRLEVPFEK 892


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
 Frame = +3

Query: 63  KRWLTTAA----HVWVFWR 107
           + WL +AA    H WV+WR
Sbjct: 202 RNWLLSAAIQPYHSWVYWR 220


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 80  SCPCLGVLAPVCGSDGKTYWSEDCAK 157
           SC   G  +P+  SD + +W+E  +K
Sbjct: 130 SCTDEGKASPILRSDKRFFWNEFASK 155


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 189 VSVRDWMWYSRNDSNSTQVSVSINFCNNF 275
           +  +D++  S+ND + +Q+SV    C ++
Sbjct: 328 IHTKDYVRPSQNDISVSQISVDEKICTSY 356


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 222 FWNTTSSRGQKPLLTVRLGLTHFAQSSL 139
           F+N  + R + P+LT+ +G  H A + L
Sbjct: 73  FFNYYNGRNKAPILTIFVGGNHEASNYL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,194
Number of Sequences: 5004
Number of extensions: 25759
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)