Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o06
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1092 + 34469732-34470118 33 0.044
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149 29 0.95
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 1.7
03_06_0549 - 34664552-34664901,34665013-34665109 28 1.7
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 27 2.2
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760... 27 2.2
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 27 3.8
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 27 3.8
07_03_0678 - 20637931-20638016,20638187-20639753 26 5.1
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 26 5.1
11_01_0808 - 7183656-7183671,7184062-7184324,7184768-7184857,718... 26 6.7
01_06_0891 - 32752825-32752932,32753085-32753176,32753293-327534... 26 6.7
10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128 25 8.9
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 25 8.9
04_01_0530 - 6928528-6929500,6929514-6930964 25 8.9
>01_06_1092 + 34469732-34470118
Length = 128
Score = 33.1 bits (72), Expect = 0.044
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 107 PVCGSDGKTYWSEDC--AKCVNPNLTVRRGFC 196
PVCG+DG TYW C A C + RRG+C
Sbjct: 65 PVCGADGVTYWC-GCPEAACAGARV-ARRGYC 94
>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
Length = 272
Score = 28.7 bits (61), Expect = 0.95
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 228 NHFWNTTSSRGQKPLLTVRLGLTHFAQSSLQYVL 127
+ W+++SSRG LT R+G +QY L
Sbjct: 223 SRMWSSSSSRGNLGKLTRRMGTLELQAGEIQYTL 256
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 119 SHRRAPKHPNMGSCRQPTFQPRKK 48
+H KH N+ +C+QP+ Q R+K
Sbjct: 490 NHEAQKKHINVENCKQPSSQAREK 513
>03_06_0549 - 34664552-34664901,34665013-34665109
Length = 148
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 95 GVLAPVCGSDGKTYWSEDCAKCVNPNLTVRRGFCPRL 205
G+ CG W E CA C V RG+ P+L
Sbjct: 91 GLADAACGDCCVHCWCESCALCQEYRELVARGYDPKL 127
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 255 STLKPELNSNHFWNTTSSRGQKPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHG 85
ST++ +L+ N W T + Q ++R L H S+L+Y + + P G
Sbjct: 243 STMQHDLSYNLTWRTLTDPSQVSSKSIRRQLGHNLLSALKYTYKIDQRNSHLRPTKG 299
>04_04_0929 -
29474540-29475247,29475485-29475850,29476032-29476093,
29476191-29476302,29476401-29476529,29476724-29476738
Length = 463
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 140 SEDCAKCVNPNLTVRRGFCP 199
S D KCV+P RRGF P
Sbjct: 414 SPDSRKCVSPGSNCRRGFVP 433
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 126 PSEPQTGAKTPKHGQLSSAN 67
PS P GAK PK G+ SS++
Sbjct: 33 PSAPPYGAKPPKEGKTSSSS 52
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 273 NCYKS*STLKPE--LNSNHFWNTTSSRGQKPLLTVRLGLTHFAQSSLQYVLPSEPQTGAK 100
NC +KP L ++ F S G LLTV T F S+ Y+ P +TG
Sbjct: 541 NCTIRHGDVKPANILLTDKFVPKISDFGTSKLLTVDKDFTMFVVGSMGYIDPIFHKTGRL 600
Query: 99 TPK 91
T K
Sbjct: 601 TQK 603
>07_03_0678 - 20637931-20638016,20638187-20639753
Length = 550
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 133 RFAIGATDGRQNTQTWAAVVSQRFSQEKKQQETQ 32
+F +GAT+ R ++ AAV+S S K +E Q
Sbjct: 258 QFILGATNPRLRNRSLAAVLSDAMSAGKNGRELQ 291
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 71 ADDSCPCLGVLAPVCGSDGKTYW 139
+DDS P L +LAP + K+YW
Sbjct: 1218 SDDSEPLLSLLAPFGIGEQKSYW 1240
>11_01_0808 -
7183656-7183671,7184062-7184324,7184768-7184857,
7184958-7185191
Length = 200
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -1
Query: 151 AVFTPIRF----AIGATDGRQNTQTWAAVVSQRFSQEKKQQ 41
A ++P R+ + D R +TW VV+ R SQE+ +
Sbjct: 51 ATYSPTRYFVEEVVSRFDDRDLHKTWTKVVAMRNSQERNNR 91
>01_06_0891 -
32752825-32752932,32753085-32753176,32753293-32753408,
32754055-32755969,32756037-32756171,32756549-32756870
Length = 895
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 129 LPSEPQTGAKTPKHGQLSSANVSAKKKNNRK 37
+ S P T A KHGQ S+A +++ K R+
Sbjct: 319 IESCPSTKAPKRKHGQFSAAEMTSGNKRCRR 349
>10_05_0051 + 8576660-8576726,8579724-8579888,8579984-8581128
Length = 458
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 237 LNSNHFWNTTSSRGQKPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPK 91
L ++ F S G LLTV T F S+ Y+ P +TG T K
Sbjct: 266 LLNDKFKPKISDFGTSKLLTVDKDFTMFVVGSMGYIDPVFHKTGRLTQK 314
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -2
Query: 243 PELNSNHFWNTTSSRGQKPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSAN 67
P NSN NTTSS + G T + +S + P +G P+ ++ A+
Sbjct: 250 PVGNSNSIVNTTSSYSYPSIQPPPPGTTSWKSNSSSSIAPPIQASGGPGPQDQYINQAH 308
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 131 TYWSEDCAKCVNPNLTV 181
TYW+ DC KC +L V
Sbjct: 730 TYWANDCYKCGRIDLLV 746
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,236,977
Number of Sequences: 37544
Number of extensions: 156104
Number of successful extensions: 456
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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