Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17o06
(307 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 34 0.022
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 34 0.022
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 30 0.28
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 30 0.37
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 30 0.37
AF022980-2|AAG24188.3| 343|Caenorhabditis elegans Hypothetical ... 29 0.85
AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical... 27 2.0
U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 26 4.5
AC024859-22|ABA00159.2| 183|Caenorhabditis elegans Twik family ... 26 4.5
AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family ... 26 4.5
Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 26 6.0
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z81592-7|CAB63314.1| 436|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z75537-1|CAA99834.1| 455|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical pr... 25 7.9
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 25 7.9
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 25 7.9
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 25 7.9
AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 comple... 25 7.9
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 33.9 bits (74), Expect = 0.022
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -1
Query: 226 SFLEYHIQSRTETSPHC*IRVDTFRAVFTPIRFAIGATDGRQNTQTWAAVVSQRFSQEKK 47
S + Y+ SRT+ S C ++V + VFT + +D R + T VV Q+F
Sbjct: 175 SIILYNFSSRTQ-SKICTLQVPPYNLVFTNHGLVVATSDRRVLSYTENGVVQQQFDY-ND 232
Query: 46 QQETQYYSHNC 14
Q E ++ S +C
Sbjct: 233 QSEKEFSSISC 243
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 33.9 bits (74), Expect = 0.022
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = -1
Query: 226 SFLEYHIQSRTETSPHC*IRVDTFRAVFTPIRFAIGATDGRQNTQTWAAVVSQRFSQEKK 47
S + Y+ SRT+ S C ++V + VFT + +D R + T VV Q+F
Sbjct: 175 SIILYNFSSRTQ-SKICTLQVPPYNLVFTNHGLVVATSDRRVLSYTENGVVQQQFDY-ND 232
Query: 46 QQETQYYSHNC 14
Q E ++ S +C
Sbjct: 233 QSEKEFSSISC 243
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 83 CPCLGVLAPVCGSDGKTYWSEDCAKCV 163
C C V+ PVCG+D TY + +CV
Sbjct: 19 CDCPSVIRPVCGTDNVTYNNLCFLRCV 45
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 83 CP-CLGVLAPVCGSDGKTYWSEDC 151
CP C VCGSDGKTY S +C
Sbjct: 465 CPSCTDEFKEVCGSDGKTY-SNEC 487
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 104 APVCGSDGKTYWSE 145
A VCG+DGKTY +E
Sbjct: 328 AHVCGTDGKTYLNE 341
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 71 ADDSCP--CLGVLAPVCGSDGKTYWSE 145
A+ CP C V+ PVC ++G+T+ +E
Sbjct: 389 AECECPNRCEDVMRPVCATNGETFDNE 415
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 59 AETLADDSCPCLGVLA--PVCGSDGKTYWSE 145
AE D CP + VCG+DG TY SE
Sbjct: 532 AECKCPDDCPSYEMEEGKEVCGTDGVTYSSE 562
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 83 CP-CLGVLAPVCGSDGKTYWSEDC 151
CP C VCGSDGKTY S +C
Sbjct: 473 CPSCTDEFKEVCGSDGKTY-SNEC 495
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 104 APVCGSDGKTYWSE 145
A VCG+DGKTY +E
Sbjct: 336 AHVCGTDGKTYLNE 349
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 71 ADDSCP--CLGVLAPVCGSDGKTYWSE 145
A+ CP C V+ PVC ++G+T+ +E
Sbjct: 397 AECECPNRCEDVMRPVCATNGETFDNE 423
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 59 AETLADDSCPCLGVLA--PVCGSDGKTYWSE 145
AE D CP + VCG+DG TY SE
Sbjct: 540 AECKCPDDCPSYEMEEGKEVCGTDGVTYSSE 570
>AF022980-2|AAG24188.3| 343|Caenorhabditis elegans Hypothetical
protein T03D3.5 protein.
Length = 343
Score = 28.7 bits (61), Expect = 0.85
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = -1
Query: 295 FRLFFIAKLLQKLIDTET*VEF 230
F+ F+++K+L+K +DT+T V+F
Sbjct: 151 FKKFYLSKMLKKSVDTKTLVDF 172
>AL110484-27|CAI46626.1| 397|Caenorhabditis elegans Hypothetical
protein Y38E10A.28 protein.
Length = 397
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 165 LTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANV 64
+T+ A ++ + +L SEP + PK GQL++ V
Sbjct: 116 ITYLAVAAAERILESEPDIKFEFPKAGQLNNLQV 149
>U39677-1|AAC47961.2| 457|Caenorhabditis elegans Hypothetical
protein C16E9.2a protein.
Length = 457
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = -1
Query: 235 EFESFLEYHIQSRTETSPHC*IRVDTFRAVFTPIRFAIGATDG-----RQNTQTWAAVVS 71
+FESF ++H + T P C + R V T +R DG + N WA +
Sbjct: 23 DFESFNQHHQEKHTSKQPACNCVAEAIRRV-TALRKLATQQDGDFTMVQNNEVKWAKLFM 81
Query: 70 QRFSQEKKQQETQYYSHN 17
+ Q T+ +H+
Sbjct: 82 EFIIGTAYCQSTKCQAHS 99
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 26.2 bits (55), Expect = 4.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 30 YCVSCCFFSWLKRWLTTA 83
YC++CC +K W TT+
Sbjct: 189 YCIACCRVKGIKIWHTTS 206
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKKNNRK 37
KPL T R+G Q S P+ P T A + + A ++ + N+K
Sbjct: 143 KPLCTTRVGTEQINQGSCLEWNPAFPDTFAASSTDRSILVAKINVQSPANQK 194
>AC024859-22|ABA00159.2| 183|Caenorhabditis elegans Twik family of
potassium channelsprotein 45, isoform b protein.
Length = 183
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 155 SRSLHSNTFCHRSHRRAPKHPNMGSCRQPTFQPRKKTT 42
SR LHS + RRAP +G F+PR ++T
Sbjct: 129 SRRLHSADDEMKEKRRAPTLGALGGFDMSLFKPRNRST 166
>AC024859-21|AAK29962.4| 490|Caenorhabditis elegans Twik family of
potassium channelsprotein 45, isoform a protein.
Length = 490
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 155 SRSLHSNTFCHRSHRRAPKHPNMGSCRQPTFQPRKKTT 42
SR LHS + RRAP +G F+PR ++T
Sbjct: 436 SRRLHSADDEMKEKRRAPTLGALGGFDMSLFKPRNRST 473
>Z68750-6|CAA92970.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 730 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 777
>Z68750-5|CAA92969.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 727 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 774
>Z68300-4|CAA92619.1| 1035|Caenorhabditis elegans Hypothetical
protein T22B3.2b protein.
Length = 1035
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 730 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 777
>Z68300-3|CAA92618.1| 1032|Caenorhabditis elegans Hypothetical
protein T22B3.2a protein.
Length = 1032
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 727 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 774
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 732 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 779
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 735 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 782
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 732 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 779
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 192 KPLLTVRLGLTHFAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKK 49
+P + V + +TH Q+ ++ +PS A Q ANV +KK
Sbjct: 735 QPTMVVGIDVTHPTQAEMRMNMPSVAAIVANVDLLPQSYGANVKVQKK 782
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 74 DDSCPCLGV-LAPVCGSDGKTYWSEDCAKC 160
+ C C L PVC +DG Y+S A C
Sbjct: 525 NSQCSCENAHLYPVCSADGTAYFSPCHAGC 554
>Z81592-7|CAB63314.1| 436|Caenorhabditis elegans Hypothetical
protein T16G1.7 protein.
Length = 436
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 90 HGQLSSANVSAKKKNNRKHSITLII 16
HG L +AN+ K++N+ K S++ +I
Sbjct: 279 HGDLWAANILWKEENDGKFSVSKVI 303
>Z75537-1|CAA99834.1| 455|Caenorhabditis elegans Hypothetical
protein F18E2.1 protein.
Length = 455
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 5/22 (22%)
Frame = +3
Query: 51 FSWLKRWLTT-----AAHVWVF 101
+ WLKR LTT AAH W+F
Sbjct: 247 YDWLKRDLTTANSNRAAHPWIF 268
>Z35719-4|CAA84798.1| 279|Caenorhabditis elegans Hypothetical
protein F17C8.6 protein.
Length = 279
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 156 FAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKKNNRKHSITLIIVE 10
FA Q VL +P+ L S KKK R +SIT I+ E
Sbjct: 155 FAFPQSQEVLTKGVVLTEASPEEDSLQGDKGSGKKKAQRGNSITEIVAE 203
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 156 FAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKKNNRKHSITLIIVE 10
FA Q VL +P+ L S KKK R +SIT I+ E
Sbjct: 1661 FAFPQSQEVLTKGVVLTEASPEEDSLQGDKGSGKKKAQRGNSITEIVAE 1709
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 156 FAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKKNNRKHSITLIIVE 10
FA Q VL +P+ L S KKK R +SIT I+ E
Sbjct: 1639 FAFPQSQEVLTKGVVLTEASPEEDSLQGDKGSGKKKAQRGNSITEIVAE 1687
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 156 FAQSSLQYVLPSEPQTGAKTPKHGQLSSANVSAKKKNNRKHSITLIIVE 10
FA Q VL +P+ L S KKK R +SIT I+ E
Sbjct: 1661 FAFPQSQEVLTKGVVLTEASPEEDSLQGDKGSGKKKAQRGNSITEIVAE 1709
>AC006815-1|AAL32260.1| 241|Caenorhabditis elegans Arp2/3 complex
component protein 4 protein.
Length = 241
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 98 VLAPVCGSDGKTYWSEDCAK 157
VLA + G DG W ED AK
Sbjct: 63 VLAQITGPDGDGKWEEDRAK 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,455,424
Number of Sequences: 27780
Number of extensions: 146551
Number of successful extensions: 445
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -