Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o05
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0385 - 17445703-17446056                                         29   2.3  
01_06_1819 + 40110697-40110721,40110818-40110828,40111228-401115...    29   2.3  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    28   7.1  
05_03_0179 - 9257066-9258946                                           28   7.1  
11_01_0458 + 3536162-3537794,3537905-3538272                           27   9.4  

>10_08_0385 - 17445703-17446056
          Length = 117

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 226 MYPIDLAPQKITIVKNVTNNEVKMAHLISGQTKTSGSNPILGHSNA 363
           MY +D +P + T  +++   +       SGQT   G N  +GH+NA
Sbjct: 4   MYDVDFSPHQATPKESMNFKDDAKVQPSSGQTPNKG-NYYMGHANA 48


>01_06_1819 +
           40110697-40110721,40110818-40110828,40111228-40111572,
           40111707-40111782,40113605-40113771,40113818-40114036
          Length = 280

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 334 SNPILGHSNASSTVMRPGLAQIIAPNVVSQPHMILSGSPIL 456
           S+ ++ H+  S+  +  G +Q + P VV+ PH+ +S  PI+
Sbjct: 70  SSVLVSHAQTSAVAVA-GTSQYLVPAVVAGPHIGMSSCPII 109


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 208 SVTTGKMYPIDLAPQKITIVKNVTNNEVKMAHLISGQTKTSGSNP-ILGHSNASSTVMRP 384
           ++T+ K +   +     +I   + N+ +K+ HL+    K SGS P  LG  N    +   
Sbjct: 176 NLTSTKHFHFGINQLSGSIPSQIFNSNMKLIHLLLDNNKFSGSIPSTLGLLNTLEVLRFD 235

Query: 385 GLAQIIAP 408
             AQ+  P
Sbjct: 236 NNAQLTGP 243


>05_03_0179 - 9257066-9258946
          Length = 626

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 345 TGSLQR*FDSDATWLGADYCAECCLPASHDIKRITN 452
           TG  ++ FD+  +WLGA   A   +  SH I  +TN
Sbjct: 47  TGGARQVFDAMPSWLGAGAGAALHVQVSHIIYPVTN 82


>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 220 GKMYPIDLAPQKITIVKNVTNNEVKMAHLISGQTKTSGSNPILGHSNASSTVMRPGLAQI 399
           G +   DL P  I + KN+  +   +      + K   S+P LG SN +S++   G    
Sbjct: 485 GTIVHCDLNPSNILLDKNMIAH---VGDFGLARFKIDSSSPSLGDSNLTSSLATRGTIGY 541

Query: 400 IAP 408
           IAP
Sbjct: 542 IAP 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,935
Number of Sequences: 37544
Number of extensions: 290510
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)