Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17o05
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    21   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 172 PFKMSGNMESDRSVTTGKMYPIDL 243
           P  MSG  ES   VT  K YP +L
Sbjct: 428 PTVMSGLDESLSDVTPRKKYPFEL 451


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 538 PSGQIISPATQIISQGTQLSA 600
           PSG I+SP+++ +    + SA
Sbjct: 18  PSGDILSPSSEPLDNDKEQSA 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 538 PSGQIISPATQIISQGTQLSA 600
           PSG I+SP+++ +    + SA
Sbjct: 18  PSGDILSPSSEPLDNDKEQSA 38


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 503 FCPNIWDPWLTI*VPCNIGDPLNI 432
           F P   D W+   V C+    LN+
Sbjct: 93  FGPRFCDTWIAFDVMCSTASILNL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,816
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)