Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n24
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical ...    83   1e-16
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    31   0.77 
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    28   5.4  
U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical p...    28   5.4  
U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    28   5.4  
U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna ...    27   7.2  
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    27   7.2  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    27   7.2  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    27   9.5  
AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.1 protein.
          Length = 132

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
 Frame = +3

Query: 222 KGFEEFSKYTRAIDSRGPPVFFYFSGSK-LPDGNSWCPDCVEAEPVVRHYLSE---LDKS 389
           +G+E F +  ++I  +G  V   F+GSK L  G SWCPDCV AEPVV   + +       
Sbjct: 10  QGYEAFQETLKSI-GKGKRVVALFTGSKILTTGESWCPDCVVAEPVVEEVIKDAAVAGLD 68

Query: 390 IIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK-WKGVQRLEGSQCSNRELLQMLF 566
           + FV V VG+RE W+D    FRTD   KL  IPTL++     +RL   Q +N+ L++  F
Sbjct: 69  VHFVTVFVGNREVWRDPAVGFRTDPTLKLTCIPTLLEVGNKAKRLLERQIANKHLVKDFF 128


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 124 LTVGNLYVFKKYIKIY*TNQVLHFPKWLLTWI*KVLKNFRNILVQLILV--VPLYF 285
           +T G LY   +  K   T     + KW++ WI   + +F   L+ L+L    P YF
Sbjct: 11  ITAGTLYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYF 66


>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 327 CPDCVEAEPVVRHYLSELDKSIIFVY 404
           CP+ +   P+V+H L ELD  ++FV+
Sbjct: 228 CPEFLAYFPLVKHLLEELDMELLFVH 253


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 225 GFEEFSKYTRAIDSRGPPVFFYFSGSKLPDGNSWCPDCVEAE 350
           G  +  K     +S G PV FY  G K PD      +CVE +
Sbjct: 245 GVNDIQKENVFRNSDGTPVDFYKWGKKQPDNQEHNENCVEVD 286


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 420 REYWKDKECPFRTDSRSKLMVIPTLIKWKGVQRLEGSQCSNR 545
           R+ +K K  P  TD  S    I     W  +QR+  S C NR
Sbjct: 56  RDVFKKKSSPCETDVNSNAEHIGGESIWGKIQRMSVSNCQNR 97


>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/101 (18%), Positives = 42/101 (41%)
 Frame = +3

Query: 162 KNLLN*SSTALPKMVINVDLKGFEEFSKYTRAIDSRGPPVFFYFSGSKLPDGNSWCPDCV 341
           +N LN     +  +V + +L       ++  ++D  G  +F  +S    PD   +     
Sbjct: 253 QNKLNRKEDFVISLVASSNLNLLFNLVEFLNSVDFFGIYLFNSYSYQVGPDSPLYGGGSR 312

Query: 342 EAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDS 464
             + ++++Y+ +  +   F  +      YW+  + P R DS
Sbjct: 313 NVDEIMKYYICKTGQPSKFNIIISFHATYWEGTDLPLRDDS 353


>U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical
           protein T20D4.7 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 270 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 407
           G  V FYFS         WCP C    P+++ +  E+++    V+V
Sbjct: 39  GKLVGFYFSAH-------WCPPCRGFTPILKDFYEEVNEEFEIVFV 77


>U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical
           protein C32D5.8a protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 270 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 407
           G  V FYFS         WCP C    P+++ +  E++     V+V
Sbjct: 25  GKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVVFV 63


>U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical
           protein C32D5.8b protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 270 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 407
           G  V FYFS         WCP C    P+++ +  E++     V+V
Sbjct: 52  GKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVVFV 90


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 324 WCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREY 428
           WC  C+ A  +V + L +L KS +   +  G+R Y
Sbjct: 119 WCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTY 153


>U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform b protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 331 GHQLLPSGSFEPLK*KNTGGPRESIARVYFENSS 230
           GH L+  G+F  +  +    P ESIA V+ EN+S
Sbjct: 277 GHLLMQQGAFS-VNGEKKRSPSESIADVFLENAS 309


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 331 GHQLLPSGSFEPLK*KNTGGPRESIARVYFENSS 230
           GH L+  G+F  +  +    P ESIA V+ EN+S
Sbjct: 397 GHLLMQQGAFS-VNGEKKRSPSESIADVFLENAS 429


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 271 VPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGI 366
           VPLY F L VQ++   +     A+KL + +G+
Sbjct: 312 VPLYHFNLQVQSHEEKVKNVQFAFKLMEDTGL 343


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 97  IFINFSIHNLTVGNLYVFKK-YIKIY*TNQVLHFPKWLLT 213
           ++ N  I  LT    Y FK+ Y  +Y TN+  HF K L++
Sbjct: 69  VWANLVIKKLTKYPDYTFKQLYYALYTTNRSAHFTKRLMS 108


>AL023847-6|CAA19552.1|  297|Caenorhabditis elegans Hypothetical
           protein Y57A10C.10 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 244 NILVQLILVVPLYFFTLAVQN-YLMAIAGAPTAWKLNQSSGITLVSSTK 387
           +I+ Q+I ++  +  TL   N Y+MAI G+P    L  SSG+   ++T+
Sbjct: 11  SIMPQIIYMIIYWNSTLINYNPYVMAITGSPLPIFLKISSGLHAGAATE 59


>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 422 RILEGQRVPVQNGQSL*VDGHTDFNKMEGSTE 517
           +I+EG+ +PV   Q L  D H + NKM GS E
Sbjct: 45  QIVEGRELPVM--QDL-ADRHPEINKMYGSAE 73


>AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical
           protein Y52E8A.3 protein.
          Length = 149

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
 Frame = +3

Query: 321 SWCPDCVEAEPVVRHYLSELDKS-----IIFVYVDVGDRE---YWKDKE-----CPFRTD 461
           SWCP C    P ++ +  E+ K+     IIFV  D    +   Y+K+ +      PF +D
Sbjct: 36  SWCPPCRAFTPKLKEFFEEIKKTHPEFEIIFVSRDRNSSDLVTYFKEHQGEWTYIPFGSD 95

Query: 462 SRSKLM 479
               LM
Sbjct: 96  KIMSLM 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,106
Number of Sequences: 27780
Number of extensions: 284021
Number of successful extensions: 700
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)