Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n23
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.57 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   1.8  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   3.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.3  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +2

Query: 359 YLTKPKKCSCRNLIL*TDDNNFCRELGTYSKPLYNTSKAPCLKTSLSAPLAYSHCDLYGL 538
           Y+  P+ C  R+L   T   NF +    +SK +Y    A  L TSL   L Y H DLY L
Sbjct: 41  YIYVPRHCLLRSLTYAT--TNFTK----FSKFVYYL--AITLHTSLLTKLIYCHADLYAL 92


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 623 IFHMFRVLVFSLDSEHPHGPSGIGIMIIRVHTN-HNVNRPVGRLSLS 486
           I H FR +V+ + ++ P G   I   + R   N   +N PV    L+
Sbjct: 233 IIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVSTTELT 279


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 167 KKHGHLKKQTTSITMS*LPRLFHDSSIPIDRNAPT 271
           +K+   K   ++   S  PR+F DS +P+ + AP+
Sbjct: 171 RKYAGCKIDISTFEQSRYPRVFVDSQLPVPKAAPS 205


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 TLENHSASSRPKADHRGRYKNAYLLNQTQEVFMQE 393
           +LEN S  S P+ D +  YK + +L  +   F  E
Sbjct: 603 SLENQSHISPPQVDSQSEYKESSILAPSNPPFETE 637


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -3

Query: 644 YFYNFTMIFHMFRVLVF 594
           +FYN  ++++ FR+L++
Sbjct: 486 FFYNLQLVYYSFRMLIY 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,229
Number of Sequences: 5004
Number of extensions: 56388
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)