Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n23
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428...    29   3.2  

>07_03_0752 -
           21241883-21242233,21242336-21242486,21242586-21242823,
           21242917-21243127,21243214-21243344,21245046-21245931,
           21246087-21246140,21246397-21246461,21246842-21246892,
           21246960-21247029,21247493-21247597
          Length = 770

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = -1

Query: 379 LLGFG*VGTHFCIFLDGQL*GEMTRYGSLKLILRSSGWRIPIYWNGTIMEQPWQLAHCDR 200
           L G+G    + CI L   L  E     SLKL L+       +YW   + +  WQ A    
Sbjct: 66  LRGYGSPHPNGCIMLYRLL--EYNISASLKLSLK-----FLLYWTKALNDDVWQEAQLAL 118

Query: 199 CSLFFQVAVLLMMIAVA 149
           CS   + +VLL+ +  A
Sbjct: 119 CSAMCRGSVLLLRVHAA 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,706
Number of Sequences: 37544
Number of extensions: 363440
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)