Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n23
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    27   0.21 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 190 FFQVAVLLMM-IAVATPNSWR 131
           FF +  +LMM IAV  PN+WR
Sbjct: 9   FFVLTTMLMMAIAVELPNNWR 29


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 232 EQPWQLAHCDRCSLFFQVAVLLMMIAVAT 146
           E+P+  +HCDR   F QVA L   + V T
Sbjct: 35  EKPYHCSHCDR--QFVQVANLRRHLRVHT 61


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 83  CFPRAMTCPSSNEACGKYLTYKGNKI 6
           C P+ +   +    C  YL   G+KI
Sbjct: 43  CVPKPIPSYACRGRCSSYLQVSGSKI 68


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 47  EACGKYLTYKGNKIK 3
           +AC  +LT+KG  I+
Sbjct: 568 QACSHHLTHKGKPIR 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,780
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)