Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n21
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   0.57 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   0.85 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect(2) = 0.57
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 134 SVHFSKPSILINLFIFTVILKY 69
           ++ FS   ILI LF+  V LK+
Sbjct: 660 AMSFSATGILITLFVCGVFLKH 681



 Score = 19.8 bits (39), Expect(2) = 0.57
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 221 EDCLSHILHCLSCEIIRLVGIYEAISC 141
           E C  H  +C   +I     + + ISC
Sbjct: 603 EQCCWHCFNCTQYQIRDHKDVTQCISC 629


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 0.85
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = +2

Query: 14  SSXHQRVSFFINYDLKITCILKLQ*K*TD*LIWTVLKNEQIY----NTKLLRK--FQPG 172
           +S HQR SF +N D  I  + K + K    L+ + + + ++Y      KLL +  F+PG
Sbjct: 116 NSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQSGMGSWEVYTKGIGAKLLLQMGFEPG 174


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 350 HQQGFSLIHVTISNY 306
           H+Q  S IH++  NY
Sbjct: 193 HRQRHSTIHLSTGNY 207


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 267 INFRFHRTCSFSNIIRDCYVNEAETLLMYR 356
           ++FR   T + S  +R  ++N    LLM R
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNWMPRLLMMR 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,372
Number of Sequences: 438
Number of extensions: 1836
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)