Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17n18
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   1.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   9.2  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 158 VSIKYIDYKYACDKNVIGAMH-FKKPLHRPACVTTSHREPVLTAPLVTESRRPAAECGPT 334
           V  K ++ ++   K+    +H +     RP     +  +P+LT   V ++  P  + G T
Sbjct: 195 VDEKLLEVEFNGKKHSFSMLHTWPVRAARPVADNLTANQPLLTGQRVLDALYPCVQGGTT 254

Query: 335 RRRRYVGCFAKMLDSFLNNYS 397
                 GC   ++   L+ YS
Sbjct: 255 AIPGAFGCGKTVISQSLSKYS 275


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 393 TPDMAQNCLRSVTSWLL-LYIQLCVCSNGVRSGV 491
           TP+  Q C R + SW   L+ + C+ ++   S V
Sbjct: 210 TPEFCQICEREIQSWFFELHSKFCLSTSTYESVV 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,932
Number of Sequences: 5004
Number of extensions: 42253
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)